Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0697 and SMa0699 are separated by 218 nucleotides SMa0699 and SMa0702 are separated by 405 nucleotides
SMa0697: SMa0697 - carbamate kinase, at 377,980 to 378,954
SMa0697
SMa0699: SMa0699 - hypothetical protein, at 379,173 to 379,643
SMa0699
SMa0702: SMa0702 - hypothetical protein, at 380,049 to 380,483
SMa0702
Position (kb) 379
380 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 378.198 kb on + strand, within SMa0697 at 378.200 kb on + strand, within SMa0697 at 378.200 kb on + strand, within SMa0697 at 378.200 kb on + strand, within SMa0697 at 378.200 kb on + strand at 378.426 kb on + strand, within SMa0697 at 378.550 kb on + strand, within SMa0697 at 378.550 kb on + strand, within SMa0697 at 378.551 kb on - strand, within SMa0697 at 378.653 kb on + strand, within SMa0697 at 378.678 kb on - strand, within SMa0697 at 378.766 kb on - strand, within SMa0697 at 378.827 kb on + strand, within SMa0697 at 378.827 kb on + strand, within SMa0697 at 378.881 kb on + strand at 378.881 kb on + strand at 378.881 kb on + strand at 378.881 kb on + strand at 378.882 kb on - strand at 378.882 kb on - strand at 378.882 kb on - strand at 378.882 kb on - strand at 379.117 kb on + strand at 379.121 kb on + strand at 379.122 kb on - strand at 379.122 kb on - strand at 379.122 kb on - strand at 379.191 kb on - strand at 379.191 kb on - strand at 379.191 kb on - strand at 379.191 kb on - strand at 379.232 kb on + strand, within SMa0699 at 379.233 kb on - strand, within SMa0699 at 379.233 kb on - strand, within SMa0699 at 379.291 kb on + strand, within SMa0699 at 379.325 kb on - strand, within SMa0699 at 379.325 kb on - strand, within SMa0699 at 379.325 kb on - strand, within SMa0699 at 379.419 kb on + strand, within SMa0699 at 379.462 kb on + strand, within SMa0699 at 379.568 kb on + strand, within SMa0699 at 379.568 kb on + strand, within SMa0699 at 379.569 kb on - strand, within SMa0699 at 379.569 kb on - strand, within SMa0699 at 379.569 kb on - strand, within SMa0699 at 379.667 kb on + strand at 379.730 kb on + strand at 379.922 kb on + strand at 379.922 kb on + strand at 379.923 kb on - strand at 379.923 kb on - strand at 379.923 kb on - strand at 379.969 kb on + strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 380.002 kb on - strand at 380.065 kb on + strand at 380.065 kb on + strand at 380.065 kb on + strand at 380.223 kb on + strand, within SMa0702 at 380.271 kb on + strand, within SMa0702 at 380.271 kb on + strand, within SMa0702 at 380.272 kb on - strand, within SMa0702 at 380.274 kb on + strand, within SMa0702 at 380.274 kb on + strand, within SMa0702 at 380.314 kb on - strand, within SMa0702 at 380.347 kb on - strand, within SMa0702 at 380.562 kb on + strand at 380.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 378,198 + SMa0697 0.22 -1.6 378,200 + SMa0697 0.23 -1.8 378,200 + SMa0697 0.23 +1.1 378,200 + SMa0697 0.23 -2.5 378,200 + -0.4 378,426 + SMa0697 0.46 +0.6 378,550 + SMa0697 0.58 +0.4 378,550 + SMa0697 0.58 +0.8 378,551 - SMa0697 0.59 +0.4 378,653 + SMa0697 0.69 -2.5 378,678 - SMa0697 0.72 +0.5 378,766 - SMa0697 0.81 +0.9 378,827 + SMa0697 0.87 +1.0 378,827 + SMa0697 0.87 -1.6 378,881 + -0.9 378,881 + +0.8 378,881 + -1.2 378,881 + -1.4 378,882 - +1.0 378,882 - -1.5 378,882 - +1.0 378,882 - +0.2 379,117 + +0.1 379,121 + +0.4 379,122 - -1.3 379,122 - -0.5 379,122 - +0.5 379,191 - +1.0 379,191 - +0.4 379,191 - +0.9 379,191 - +0.1 379,232 + SMa0699 0.13 -1.0 379,233 - SMa0699 0.13 +1.0 379,233 - SMa0699 0.13 -4.4 379,291 + SMa0699 0.25 -1.0 379,325 - SMa0699 0.32 +1.0 379,325 - SMa0699 0.32 -3.1 379,325 - SMa0699 0.32 -1.4 379,419 + SMa0699 0.52 -0.0 379,462 + SMa0699 0.61 +0.8 379,568 + SMa0699 0.84 -0.4 379,568 + SMa0699 0.84 +0.9 379,569 - SMa0699 0.84 +1.6 379,569 - SMa0699 0.84 -1.8 379,569 - SMa0699 0.84 -2.3 379,667 + -2.4 379,730 + -1.2 379,922 + +0.2 379,922 + -1.4 379,923 - +2.0 379,923 - -0.1 379,923 - -0.4 379,969 + -0.5 379,970 - -3.7 379,970 - -1.3 379,970 - +0.8 379,970 - -1.4 379,970 - +1.5 379,970 - -0.5 380,002 - -3.8 380,065 + -2.6 380,065 + -0.4 380,065 + -0.5 380,223 + SMa0702 0.40 -0.2 380,271 + SMa0702 0.51 -0.6 380,271 + SMa0702 0.51 -0.5 380,272 - SMa0702 0.51 +1.0 380,274 + SMa0702 0.52 -4.2 380,274 + SMa0702 0.52 -0.2 380,314 - SMa0702 0.61 +4.6 380,347 - SMa0702 0.69 +1.1 380,562 + +0.6 380,563 - -1.3
Or see this region's nucleotide sequence