Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5025 and SMa0535 are separated by 51 nucleotides SMa0535 and SMa0537 are separated by 281 nucleotides SMa0537 and SMa0538 are separated by 4 nucleotides
SMa5025: SMa5025 - hypothetical protein, at 286,919 to 287,350
SMa5025
SMa0535: SMa0535 - hypothetical protein, at 287,402 to 287,641
SMa0535
SMa0537: SMa0537 - hypothetical protein, at 287,923 to 288,336
SMa0537
SMa0538: SMa0538 - hypothetical protein, at 288,341 to 288,703
SMa0538
Position (kb) 288
289 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 287.345 kb on - strand at 287.345 kb on - strand at 287.379 kb on + strand at 287.671 kb on + strand at 287.672 kb on - strand at 287.672 kb on - strand at 287.674 kb on - strand at 287.781 kb on + strand at 287.782 kb on - strand at 287.857 kb on - strand at 287.857 kb on - strand at 287.857 kb on - strand at 287.857 kb on - strand at 287.860 kb on - strand at 287.883 kb on + strand at 287.883 kb on + strand at 287.883 kb on + strand at 287.883 kb on + strand at 287.884 kb on - strand at 287.931 kb on + strand at 287.931 kb on + strand at 287.932 kb on - strand at 287.958 kb on + strand at 287.958 kb on + strand at 288.013 kb on + strand, within SMa0537 at 288.230 kb on - strand, within SMa0537 at 288.230 kb on - strand, within SMa0537 at 288.231 kb on + strand, within SMa0537 at 288.231 kb on + strand, within SMa0537 at 288.231 kb on + strand, within SMa0537 at 288.231 kb on + strand, within SMa0537 at 288.232 kb on - strand, within SMa0537 at 288.277 kb on + strand, within SMa0537 at 288.277 kb on + strand, within SMa0537 at 288.278 kb on - strand, within SMa0537 at 288.280 kb on - strand at 288.280 kb on - strand, within SMa0537 at 288.280 kb on - strand, within SMa0537 at 288.280 kb on - strand, within SMa0537 at 288.280 kb on - strand, within SMa0537 at 288.404 kb on + strand, within SMa0538 at 288.405 kb on - strand, within SMa0538 at 288.405 kb on - strand, within SMa0538 at 288.416 kb on + strand, within SMa0538 at 288.416 kb on + strand, within SMa0538 at 288.416 kb on + strand, within SMa0538 at 288.416 kb on + strand, within SMa0538 at 288.417 kb on - strand, within SMa0538 at 288.417 kb on - strand, within SMa0538 at 288.645 kb on - strand, within SMa0538 at 288.968 kb on - strand at 289.010 kb on + strand at 289.011 kb on - strand at 289.011 kb on - strand at 289.025 kb on + strand at 289.026 kb on - strand at 289.103 kb on - strand at 289.107 kb on - strand at 289.107 kb on - strand at 289.180 kb on + strand at 289.188 kb on + strand at 289.188 kb on + strand at 289.189 kb on - strand at 289.209 kb on + strand at 289.209 kb on + strand at 289.290 kb on + strand at 289.451 kb on + strand at 289.451 kb on + strand at 289.521 kb on - strand at 289.551 kb on + strand at 289.631 kb on + strand at 289.638 kb on - strand at 289.654 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 287,345 - +0.1 287,345 - -1.3 287,379 + -0.7 287,671 + -0.2 287,672 - +0.2 287,672 - +1.3 287,674 - +0.9 287,781 + -0.4 287,782 - +0.9 287,857 - +0.3 287,857 - -3.9 287,857 - +1.6 287,857 - +0.3 287,860 - -1.5 287,883 + +1.4 287,883 + -0.4 287,883 + -0.0 287,883 + -2.9 287,884 - +2.0 287,931 + -0.7 287,931 + -0.6 287,932 - +0.8 287,958 + +2.0 287,958 + -0.8 288,013 + SMa0537 0.22 -0.7 288,230 - SMa0537 0.74 +1.3 288,230 - SMa0537 0.74 +1.6 288,231 + SMa0537 0.74 -1.4 288,231 + SMa0537 0.74 +0.6 288,231 + SMa0537 0.74 -1.4 288,231 + SMa0537 0.74 +1.4 288,232 - SMa0537 0.75 +0.5 288,277 + SMa0537 0.86 +0.4 288,277 + SMa0537 0.86 -1.6 288,278 - SMa0537 0.86 +0.7 288,280 - -1.6 288,280 - SMa0537 0.86 +0.2 288,280 - SMa0537 0.86 -2.8 288,280 - SMa0537 0.86 -2.4 288,280 - SMa0537 0.86 +1.3 288,404 + SMa0538 0.17 -1.0 288,405 - SMa0538 0.18 -1.0 288,405 - SMa0538 0.18 +0.2 288,416 + SMa0538 0.21 -0.4 288,416 + SMa0538 0.21 +0.2 288,416 + SMa0538 0.21 -3.8 288,416 + SMa0538 0.21 -1.4 288,417 - SMa0538 0.21 +0.4 288,417 - SMa0538 0.21 -4.3 288,645 - SMa0538 0.84 -0.7 288,968 - +0.4 289,010 + +0.6 289,011 - +0.0 289,011 - +0.4 289,025 + +6.2 289,026 - +2.0 289,103 - +1.0 289,107 - +0.1 289,107 - +0.2 289,180 + +0.2 289,188 + +0.2 289,188 + -0.2 289,189 - -0.1 289,209 + -0.1 289,209 + +0.1 289,290 + +0.9 289,451 + +1.0 289,451 + -0.3 289,521 - -1.6 289,551 + +0.9 289,631 + -2.6 289,638 - +0.4 289,654 + -0.2
Or see this region's nucleotide sequence