Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0506 and SMa0508 are separated by 49 nucleotides SMa0508 and SMa0510 are separated by 72 nucleotides SMa0510 and SMa0512 are separated by 10 nucleotides
SMa0506: SMa0506 - ABC transporter periplasmic substrate-binding protein, at 274,136 to 274,933
SMa0506
SMa0508: SMa0508 - ABC transporter ATP-binding protein, at 274,983 to 275,714
SMa0508
SMa0510: SMa0510 - D-isomer specific 2-hydroxyacid dehydrogenase, at 275,787 to 276,734
SMa0510
SMa0512: SMa0512 - IdnD L-idonate 5-dehydrogenase, at 276,745 to 277,776
SMa0512
Position (kb) 275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 274.789 kb on - strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 275.047 kb on + strand at 275.244 kb on + strand, within SMa0508 at 275.245 kb on - strand, within SMa0508 at 275.245 kb on - strand, within SMa0508 at 275.386 kb on - strand, within SMa0508 at 275.708 kb on - strand at 275.803 kb on + strand at 275.803 kb on + strand at 275.803 kb on + strand at 275.804 kb on - strand at 275.804 kb on - strand at 276.018 kb on + strand, within SMa0510 at 276.018 kb on + strand, within SMa0510 at 276.019 kb on - strand, within SMa0510 at 276.019 kb on - strand, within SMa0510 at 276.196 kb on - strand, within SMa0510 at 276.303 kb on + strand, within SMa0510 at 276.304 kb on - strand, within SMa0510 at 276.426 kb on - strand, within SMa0510 at 276.871 kb on + strand, within SMa0512 at 276.871 kb on + strand, within SMa0512 at 276.872 kb on - strand, within SMa0512 at 276.874 kb on + strand, within SMa0512 at 276.874 kb on + strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 277.033 kb on + strand, within SMa0512 at 277.034 kb on - strand, within SMa0512 at 277.463 kb on - strand, within SMa0512 at 277.463 kb on - strand, within SMa0512
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 274,789 - SMa0506 0.82 -3.4 274,790 + SMa0506 0.82 +0.1 274,790 + SMa0506 0.82 -1.0 275,047 + +0.6 275,244 + SMa0508 0.36 -1.6 275,245 - SMa0508 0.36 -2.6 275,245 - SMa0508 0.36 +1.2 275,386 - SMa0508 0.55 +0.5 275,708 - -0.8 275,803 + +0.3 275,803 + -1.5 275,803 + +0.4 275,804 - -1.2 275,804 - +1.1 276,018 + SMa0510 0.24 -0.3 276,018 + SMa0510 0.24 -0.4 276,019 - SMa0510 0.24 -0.2 276,019 - SMa0510 0.24 -0.8 276,196 - SMa0510 0.43 -0.1 276,303 + SMa0510 0.54 +0.1 276,304 - SMa0510 0.55 -1.8 276,426 - SMa0510 0.67 +0.6 276,871 + SMa0512 0.12 -2.2 276,871 + SMa0512 0.12 -0.5 276,872 - SMa0512 0.12 +0.0 276,874 + SMa0512 0.12 +0.2 276,874 + SMa0512 0.12 +0.3 276,875 - SMa0512 0.13 +0.6 276,875 - SMa0512 0.13 -0.4 276,875 - SMa0512 0.13 +0.8 276,875 - SMa0512 0.13 -0.4 277,033 + SMa0512 0.28 -0.2 277,034 - SMa0512 0.28 -0.3 277,463 - SMa0512 0.70 +1.0 277,463 - SMa0512 0.70 +1.9
Or see this region's nucleotide sequence