Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0501 and SMa0503 are separated by 1 nucleotides SMa0503 and SMa0506 are separated by 57 nucleotides SMa0506 and SMa0508 are separated by 49 nucleotides SMa0508 and SMa0510 are separated by 72 nucleotides
SMa0501: SMa0501 - ABC transporter permease, at 272,734 to 273,420
SMa0501
SMa0503: SMa0503 - ABC transporter permease, at 273,422 to 274,078
SMa0503
SMa0506: SMa0506 - ABC transporter periplasmic substrate-binding protein, at 274,136 to 274,933
SMa0506
SMa0508: SMa0508 - ABC transporter ATP-binding protein, at 274,983 to 275,714
SMa0508
SMa0510: SMa0510 - D-isomer specific 2-hydroxyacid dehydrogenase, at 275,787 to 276,734
SMa0510
Position (kb) 274
275 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 273.142 kb on + strand, within SMa0501 at 273.143 kb on - strand, within SMa0501 at 273.325 kb on + strand, within SMa0501 at 273.325 kb on + strand, within SMa0501 at 273.325 kb on + strand, within SMa0501 at 273.326 kb on - strand, within SMa0501 at 273.326 kb on - strand, within SMa0501 at 273.462 kb on - strand at 273.462 kb on - strand at 273.462 kb on - strand at 273.584 kb on + strand, within SMa0503 at 273.584 kb on + strand, within SMa0503 at 273.584 kb on + strand, within SMa0503 at 273.585 kb on - strand, within SMa0503 at 273.585 kb on - strand, within SMa0503 at 273.585 kb on - strand, within SMa0503 at 273.635 kb on + strand, within SMa0503 at 273.635 kb on + strand, within SMa0503 at 273.638 kb on + strand, within SMa0503 at 273.639 kb on - strand, within SMa0503 at 273.800 kb on + strand, within SMa0503 at 273.905 kb on - strand, within SMa0503 at 273.998 kb on + strand, within SMa0503 at 273.998 kb on + strand, within SMa0503 at 274.234 kb on + strand, within SMa0506 at 274.454 kb on + strand, within SMa0506 at 274.493 kb on + strand, within SMa0506 at 274.494 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.776 kb on - strand, within SMa0506 at 274.789 kb on - strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 275.047 kb on + strand at 275.244 kb on + strand, within SMa0508 at 275.245 kb on - strand, within SMa0508 at 275.245 kb on - strand, within SMa0508 at 275.386 kb on - strand, within SMa0508 at 275.708 kb on - strand at 275.803 kb on + strand at 275.803 kb on + strand at 275.803 kb on + strand at 275.804 kb on - strand at 275.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 273,142 + SMa0501 0.59 +0.3 273,143 - SMa0501 0.60 -0.4 273,325 + SMa0501 0.86 -4.4 273,325 + SMa0501 0.86 -1.1 273,325 + SMa0501 0.86 -3.4 273,326 - SMa0501 0.86 -1.0 273,326 - SMa0501 0.86 -1.2 273,462 - -0.2 273,462 - +1.2 273,462 - +0.1 273,584 + SMa0503 0.25 -1.0 273,584 + SMa0503 0.25 +4.3 273,584 + SMa0503 0.25 -0.6 273,585 - SMa0503 0.25 +0.0 273,585 - SMa0503 0.25 -0.5 273,585 - SMa0503 0.25 +0.6 273,635 + SMa0503 0.32 -1.0 273,635 + SMa0503 0.32 -0.7 273,638 + SMa0503 0.33 -0.9 273,639 - SMa0503 0.33 +0.2 273,800 + SMa0503 0.58 -3.2 273,905 - SMa0503 0.74 -1.8 273,998 + SMa0503 0.88 +0.3 273,998 + SMa0503 0.88 -3.3 274,234 + SMa0506 0.12 +0.5 274,454 + SMa0506 0.40 -1.8 274,493 + SMa0506 0.45 -1.5 274,494 - SMa0506 0.45 -3.9 274,716 - SMa0506 0.73 -0.7 274,716 - SMa0506 0.73 +0.6 274,716 - SMa0506 0.73 +0.2 274,776 - SMa0506 0.80 -0.5 274,789 - SMa0506 0.82 -3.4 274,790 + SMa0506 0.82 +0.1 274,790 + SMa0506 0.82 -1.0 275,047 + +0.6 275,244 + SMa0508 0.36 -1.6 275,245 - SMa0508 0.36 -2.6 275,245 - SMa0508 0.36 +1.2 275,386 - SMa0508 0.55 +0.5 275,708 - -0.8 275,803 + +0.3 275,803 + -1.5 275,803 + +0.4 275,804 - -1.2 275,804 - +1.1
Or see this region's nucleotide sequence