Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0329 and SMa5017 are separated by 55 nucleotides SMa5017 and SMa0333 overlap by 4 nucleotides SMa0333 and SMa0335 are separated by 180 nucleotides SMa0335 and SMa0337 overlap by 14 nucleotides
SMa0329: SMa0329 - short chain alcohol dehydrogenase-related dehydrogenase, at 182,145 to 182,906
SMa0329
SMa5017: SMa5017 - hypothetical protein, at 182,962 to 183,186
SMa5017
SMa0333: SMa0333 - hypothetical protein, at 183,183 to 183,395
SMa0333
SMa0335: SMa0335 - 3-ketoacyl-ACP reductase, at 183,576 to 184,352
SMa0335
SMa0337: SMa0337 - hypothetical protein, at 184,339 to 184,821
SMa0337
Position (kb) 183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 182.499 kb on + strand, within SMa0329 at 182.500 kb on - strand, within SMa0329 at 182.500 kb on - strand, within SMa0329 at 182.682 kb on - strand, within SMa0329 at 182.700 kb on - strand, within SMa0329 at 183.231 kb on - strand, within SMa0333 at 183.238 kb on + strand, within SMa0333 at 183.238 kb on + strand, within SMa0333 at 183.381 kb on - strand at 183.381 kb on - strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.629 kb on - strand at 183.629 kb on - strand at 183.868 kb on + strand, within SMa0335 at 183.868 kb on + strand, within SMa0335 at 184.242 kb on - strand, within SMa0335
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 182,499 + SMa0329 0.46 -3.2 182,500 - SMa0329 0.47 +0.8 182,500 - SMa0329 0.47 +0.0 182,682 - SMa0329 0.70 +0.9 182,700 - SMa0329 0.73 +0.3 183,231 - SMa0333 0.23 -3.0 183,238 + SMa0333 0.26 -0.8 183,238 + SMa0333 0.26 -2.1 183,381 - -1.5 183,381 - -0.5 183,628 + +3.0 183,628 + +0.3 183,628 + +1.0 183,628 + -2.8 183,628 + +0.2 183,629 - +0.3 183,629 - +1.5 183,868 + SMa0335 0.38 -0.4 183,868 + SMa0335 0.38 -0.4 184,242 - SMa0335 0.86 -1.8
Or see this region's nucleotide sequence