Strain Fitness in Sinorhizobium meliloti 1021 around SMa0222
Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
121,075 | + | SMa0220 | 0.42 | -0.8 | |
121,076 | - | SMa0220 | 0.42 | -0.5 | |
121,084 | + | SMa0220 | 0.42 | -0.3 | |
121,285 | + | SMa0220 | 0.56 | -0.5 | |
121,302 | - | SMa0220 | 0.57 | +1.4 | |
121,460 | + | SMa0220 | 0.67 | +2.1 | |
121,460 | + | SMa0220 | 0.67 | -0.9 | |
121,460 | + | SMa0220 | 0.67 | -1.6 | |
121,461 | - | SMa0220 | 0.67 | +0.2 | |
121,461 | - | SMa0220 | 0.67 | -2.3 | |
121,461 | - | SMa0220 | 0.67 | +0.1 | |
121,907 | + | -0.4 | |||
121,959 | + | -0.2 | |||
121,960 | - | -0.2 | |||
122,416 | - | SMa0222 | 0.50 | +1.1 | |
122,447 | + | +2.1 | |||
122,448 | - | SMa0222 | 0.55 | -0.7 | |
122,448 | - | SMa0222 | 0.55 | +2.0 | |
122,956 | + | SMa0223 | 0.13 | -0.3 | |
122,972 | - | SMa0223 | 0.15 | +0.9 | |
123,057 | + | SMa0223 | 0.26 | -0.9 | |
123,069 | - | SMa0223 | 0.28 | -2.5 | |
123,137 | + | SMa0223 | 0.36 | +0.2 | |
123,137 | + | SMa0223 | 0.36 | +0.1 | |
123,151 | - | SMa0223 | 0.38 | -0.2 | |
123,291 | + | SMa0223 | 0.56 | -0.5 | |
123,292 | - | SMa0223 | 0.56 | +0.5 | |
123,381 | - | SMa0223 | 0.67 | +0.6 | |
123,497 | + | SMa0223 | 0.82 | -0.1 | |
123,660 | - | -2.5 | |||
123,700 | + | +0.4 | |||
123,700 | + | -1.4 | |||
123,701 | - | +0.3 | |||
123,709 | - | -2.1 | |||
123,772 | + | SMa0224 | 0.12 | +0.6 | |
123,773 | - | SMa0224 | 0.12 | +0.4 |
Or see this region's nucleotide sequence