Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0062 and SMa0063 are separated by 129 nucleotides SMa0063 and SMa0064 are separated by 2 nucleotides
SMa0062: SMa0062 - GntR family transcriptional regulator, at 32,634 to 33,323
SMa0062
SMa0063: SMa0063 - GntR family transcriptional regulator, at 33,453 to 34,187
SMa0063
SMa0064: SMa0064 - dehydratase/enolase, at 34,190 to 35,392
SMa0064
Position (kb) 33
34
35 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 32.515 kb on + strand at 32.616 kb on - strand at 32.620 kb on - strand at 32.769 kb on - strand, within SMa0062 at 32.951 kb on - strand, within SMa0062 at 33.049 kb on - strand, within SMa0062 at 33.107 kb on + strand, within SMa0062 at 33.107 kb on + strand, within SMa0062 at 33.108 kb on - strand, within SMa0062 at 33.288 kb on + strand at 33.351 kb on + strand at 33.351 kb on + strand at 33.351 kb on + strand at 33.352 kb on - strand at 33.616 kb on + strand, within SMa0063 at 33.642 kb on + strand, within SMa0063 at 33.643 kb on - strand, within SMa0063 at 34.010 kb on + strand, within SMa0063 at 34.064 kb on + strand, within SMa0063 at 34.157 kb on - strand at 34.183 kb on - strand at 34.238 kb on - strand at 34.319 kb on + strand, within SMa0064 at 34.319 kb on + strand, within SMa0064 at 34.319 kb on + strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.401 kb on - strand, within SMa0064 at 34.401 kb on - strand, within SMa0064 at 34.401 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.566 kb on - strand, within SMa0064 at 34.566 kb on - strand, within SMa0064 at 34.567 kb on + strand, within SMa0064 at 34.628 kb on + strand, within SMa0064 at 34.629 kb on - strand, within SMa0064 at 34.629 kb on - strand, within SMa0064 at 34.754 kb on - strand, within SMa0064 at 34.754 kb on - strand, within SMa0064 at 34.899 kb on - strand, within SMa0064 at 35.055 kb on + strand, within SMa0064 at 35.056 kb on - strand, within SMa0064
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 32,515 + -0.7 32,616 - -0.4 32,620 - -2.3 32,769 - SMa0062 0.20 +2.2 32,951 - SMa0062 0.46 -2.3 33,049 - SMa0062 0.60 -0.3 33,107 + SMa0062 0.69 +0.0 33,107 + SMa0062 0.69 -3.3 33,108 - SMa0062 0.69 -0.3 33,288 + +0.7 33,351 + -0.2 33,351 + +0.2 33,351 + -0.7 33,352 - -1.3 33,616 + SMa0063 0.22 +0.4 33,642 + SMa0063 0.26 -1.5 33,643 - SMa0063 0.26 -0.5 34,010 + SMa0063 0.76 -2.8 34,064 + SMa0063 0.83 -0.3 34,157 - +0.7 34,183 - -2.9 34,238 - +2.2 34,319 + SMa0064 0.11 -0.3 34,319 + SMa0064 0.11 +0.7 34,319 + SMa0064 0.11 +0.4 34,320 - SMa0064 0.11 +0.1 34,320 - SMa0064 0.11 -1.1 34,320 - SMa0064 0.11 -4.9 34,320 - SMa0064 0.11 +0.8 34,320 - SMa0064 0.11 +0.2 34,320 - SMa0064 0.11 -1.3 34,320 - SMa0064 0.11 +0.5 34,401 - SMa0064 0.18 -1.7 34,401 - SMa0064 0.18 -1.9 34,401 - SMa0064 0.18 +0.6 34,542 - SMa0064 0.29 +0.2 34,542 - SMa0064 0.29 -0.2 34,542 - SMa0064 0.29 -1.1 34,542 - SMa0064 0.29 +0.7 34,542 - SMa0064 0.29 +0.4 34,542 - SMa0064 0.29 +0.6 34,565 + SMa0064 0.31 -1.9 34,565 + SMa0064 0.31 -2.4 34,565 + SMa0064 0.31 +0.0 34,565 + SMa0064 0.31 -0.8 34,565 + SMa0064 0.31 -1.9 34,565 + SMa0064 0.31 +0.5 34,565 + SMa0064 0.31 -0.4 34,565 + SMa0064 0.31 -2.1 34,565 + SMa0064 0.31 -3.3 34,566 - SMa0064 0.31 -1.7 34,566 - SMa0064 0.31 +0.1 34,567 + SMa0064 0.31 -1.3 34,628 + SMa0064 0.36 +0.4 34,629 - SMa0064 0.36 -0.3 34,629 - SMa0064 0.36 -0.3 34,754 - SMa0064 0.47 -2.0 34,754 - SMa0064 0.47 -1.2 34,899 - SMa0064 0.59 -1.6 35,055 + SMa0064 0.72 -0.3 35,056 - SMa0064 0.72 -0.3
Or see this region's nucleotide sequence