Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0056 and SMa0058 are separated by 63 nucleotides SMa0058 and SMa0059 are separated by 14 nucleotides SMa0059 and SMa0060 overlap by 1 nucleotides
SMa0056: SMa0056 - dehydratase/enolase, at 28,295 to 29,428
SMa0056
SMa0058: SMa0058 - N-acylglucosamine 2-epimerase, at 29,492 to 30,688
SMa0058
SMa0059: SMa0059 - short-chain alcohol dehydrogenase, at 30,703 to 31,488
SMa0059
SMa0060: SMa0060 - gluconolactonase, at 31,488 to 32,423
SMa0060
Position (kb) 29
30
31 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 28.633 kb on + strand, within SMa0056 at 28.746 kb on + strand, within SMa0056 at 28.821 kb on + strand, within SMa0056 at 28.878 kb on + strand, within SMa0056 at 28.878 kb on + strand, within SMa0056 at 28.943 kb on + strand, within SMa0056 at 28.944 kb on - strand, within SMa0056 at 29.022 kb on + strand, within SMa0056 at 29.023 kb on - strand, within SMa0056 at 29.150 kb on - strand, within SMa0056 at 29.151 kb on + strand, within SMa0056 at 29.151 kb on + strand, within SMa0056 at 29.151 kb on + strand, within SMa0056 at 29.151 kb on + strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.223 kb on + strand, within SMa0056 at 29.324 kb on - strand at 29.493 kb on + strand at 29.494 kb on - strand at 29.526 kb on + strand at 29.526 kb on + strand at 29.527 kb on - strand at 29.527 kb on - strand at 29.625 kb on + strand, within SMa0058 at 29.625 kb on + strand, within SMa0058 at 29.626 kb on - strand, within SMa0058 at 29.673 kb on + strand, within SMa0058 at 29.754 kb on + strand, within SMa0058 at 29.755 kb on - strand, within SMa0058 at 29.796 kb on + strand, within SMa0058 at 29.796 kb on + strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.949 kb on + strand, within SMa0058 at 29.986 kb on - strand, within SMa0058 at 30.015 kb on + strand, within SMa0058 at 30.016 kb on - strand, within SMa0058 at 30.120 kb on + strand, within SMa0058 at 30.120 kb on + strand, within SMa0058 at 30.213 kb on + strand, within SMa0058 at 30.213 kb on + strand, within SMa0058 at 30.342 kb on + strand, within SMa0058 at 30.390 kb on + strand, within SMa0058 at 30.393 kb on + strand, within SMa0058 at 30.394 kb on - strand, within SMa0058 at 30.433 kb on - strand, within SMa0058 at 30.433 kb on - strand, within SMa0058 at 30.437 kb on + strand, within SMa0058 at 30.437 kb on + strand, within SMa0058 at 30.437 kb on + strand, within SMa0058 at 30.437 kb on + strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.499 kb on - strand, within SMa0058 at 30.499 kb on - strand, within SMa0058 at 30.570 kb on + strand at 30.579 kb on + strand at 30.579 kb on + strand at 30.619 kb on - strand at 30.966 kb on + strand, within SMa0059 at 30.967 kb on - strand, within SMa0059 at 30.967 kb on - strand, within SMa0059 at 31.035 kb on - strand, within SMa0059 at 31.061 kb on + strand, within SMa0059 at 31.062 kb on - strand, within SMa0059 at 31.062 kb on - strand, within SMa0059 at 31.062 kb on - strand, within SMa0059 at 31.242 kb on + strand, within SMa0059 at 31.602 kb on - strand, within SMa0060 at 31.645 kb on + strand, within SMa0060 at 31.646 kb on - strand, within SMa0060 at 31.646 kb on - strand, within SMa0060
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 28,633 + SMa0056 0.30 -0.9 28,746 + SMa0056 0.40 -0.5 28,821 + SMa0056 0.46 -0.2 28,878 + SMa0056 0.51 +0.0 28,878 + SMa0056 0.51 -1.0 28,943 + SMa0056 0.57 -3.1 28,944 - SMa0056 0.57 -0.3 29,022 + SMa0056 0.64 +0.3 29,023 - SMa0056 0.64 +0.7 29,150 - SMa0056 0.75 -4.0 29,151 + SMa0056 0.75 +1.9 29,151 + SMa0056 0.75 -4.5 29,151 + SMa0056 0.75 -1.3 29,151 + SMa0056 0.75 +0.6 29,152 - SMa0056 0.76 -0.1 29,152 - SMa0056 0.76 -2.3 29,152 - SMa0056 0.76 -0.3 29,152 - SMa0056 0.76 -3.0 29,152 - SMa0056 0.76 -2.1 29,223 + SMa0056 0.82 +0.5 29,324 - +2.0 29,493 + +1.2 29,494 - -0.5 29,526 + -0.9 29,526 + -0.3 29,527 - +0.6 29,527 - -0.4 29,625 + SMa0058 0.11 +2.0 29,625 + SMa0058 0.11 -0.2 29,626 - SMa0058 0.11 -1.0 29,673 + SMa0058 0.15 +0.9 29,754 + SMa0058 0.22 -1.5 29,755 - SMa0058 0.22 +1.3 29,796 + SMa0058 0.25 -2.9 29,796 + SMa0058 0.25 +0.5 29,797 - SMa0058 0.25 -3.1 29,797 - SMa0058 0.25 -2.1 29,797 - SMa0058 0.25 +0.1 29,797 - SMa0058 0.25 +3.0 29,949 + SMa0058 0.38 -3.6 29,986 - SMa0058 0.41 +2.1 30,015 + SMa0058 0.44 +0.9 30,016 - SMa0058 0.44 +0.1 30,120 + SMa0058 0.52 -1.5 30,120 + SMa0058 0.52 +0.9 30,213 + SMa0058 0.60 +1.5 30,213 + SMa0058 0.60 -0.4 30,342 + SMa0058 0.71 +0.5 30,390 + SMa0058 0.75 +0.6 30,393 + SMa0058 0.75 +0.9 30,394 - SMa0058 0.75 -1.2 30,433 - SMa0058 0.79 -1.0 30,433 - SMa0058 0.79 -0.6 30,437 + SMa0058 0.79 +1.1 30,437 + SMa0058 0.79 -0.5 30,437 + SMa0058 0.79 -0.5 30,437 + SMa0058 0.79 -1.9 30,438 - SMa0058 0.79 -0.5 30,438 - SMa0058 0.79 +1.8 30,438 - SMa0058 0.79 +0.6 30,438 - SMa0058 0.79 -1.1 30,438 - SMa0058 0.79 +0.2 30,499 - SMa0058 0.84 +0.2 30,499 - SMa0058 0.84 -0.3 30,570 + +1.7 30,579 + +0.3 30,579 + +1.3 30,619 - -4.5 30,966 + SMa0059 0.33 -1.7 30,967 - SMa0059 0.34 -2.3 30,967 - SMa0059 0.34 -0.0 31,035 - SMa0059 0.42 -0.0 31,061 + SMa0059 0.46 -3.6 31,062 - SMa0059 0.46 +0.5 31,062 - SMa0059 0.46 +1.1 31,062 - SMa0059 0.46 +0.7 31,242 + SMa0059 0.69 +1.2 31,602 - SMa0060 0.12 -0.1 31,645 + SMa0060 0.17 -0.1 31,646 - SMa0060 0.17 -2.9 31,646 - SMa0060 0.17 -0.9
Or see this region's nucleotide sequence