Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0002 and SMa0005 overlap by 4 nucleotides SMa0005 and SMa0007 overlap by 23 nucleotides SMa0007 and SMa0009 are separated by 38 nucleotides SMa0009 and SMa0011 are separated by 4 nucleotides
SMa0002: SMa0002 - formate dehydrogenase subunit alpha, at 1,353 to 4,457
SMa0002
SMa0005: SMa0005 - formate dehydrogenase susbunit beta, at 4,454 to 5,446
SMa0005
SMa0007: SMa0007 - formate dehydrogenase subunit gamma, at 5,424 to 6,110
SMa0007
SMa0009: SMa0009 - formate dehydrogenase subunit epsilon, at 6,149 to 7,069
SMa0009
SMa0011: SMa0011 - selenocysteine synthase, at 7,074 to 8,474
SMa0011
Position (kb) 5
6
7 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4.449 kb on - strand at 4.453 kb on + strand at 4.453 kb on + strand at 4.453 kb on + strand at 4.454 kb on - strand at 4.454 kb on - strand at 4.516 kb on + strand at 4.691 kb on + strand, within SMa0005 at 4.694 kb on + strand, within SMa0005 at 4.695 kb on - strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.696 kb on + strand, within SMa0005 at 4.697 kb on - strand, within SMa0005 at 4.869 kb on - strand, within SMa0005 at 4.923 kb on + strand, within SMa0005 at 4.976 kb on + strand at 4.977 kb on - strand at 4.977 kb on - strand, within SMa0005 at 5.126 kb on + strand, within SMa0005 at 5.128 kb on + strand, within SMa0005 at 5.129 kb on - strand, within SMa0005 at 5.129 kb on - strand, within SMa0005 at 5.129 kb on - strand, within SMa0005 at 5.144 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.213 kb on + strand, within SMa0005 at 5.213 kb on + strand, within SMa0005 at 5.279 kb on + strand, within SMa0005 at 5.279 kb on + strand, within SMa0005 at 5.279 kb on + strand, within SMa0005 at 5.280 kb on - strand, within SMa0005 at 5.280 kb on - strand, within SMa0005 at 5.280 kb on - strand, within SMa0005 at 5.790 kb on + strand, within SMa0007 at 5.790 kb on + strand, within SMa0007 at 5.790 kb on + strand, within SMa0007 at 5.791 kb on - strand, within SMa0007 at 5.791 kb on - strand, within SMa0007 at 5.877 kb on + strand, within SMa0007 at 5.883 kb on + strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.891 kb on + strand, within SMa0007 at 5.891 kb on + strand at 5.891 kb on + strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.977 kb on - strand, within SMa0007 at 5.977 kb on - strand, within SMa0007 at 5.977 kb on - strand, within SMa0007 at 6.166 kb on - strand at 6.296 kb on + strand, within SMa0009 at 6.297 kb on - strand, within SMa0009 at 6.620 kb on + strand, within SMa0009 at 6.620 kb on + strand, within SMa0009 at 6.620 kb on + strand, within SMa0009 at 6.620 kb on + strand, within SMa0009 at 6.621 kb on - strand, within SMa0009 at 6.621 kb on - strand, within SMa0009 at 6.621 kb on - strand, within SMa0009 at 6.861 kb on - strand, within SMa0009 at 6.944 kb on + strand, within SMa0009 at 7.028 kb on + strand at 7.028 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 4,449 - -0.3 4,453 + +1.6 4,453 + -3.0 4,453 + -0.6 4,454 - +0.2 4,454 - +0.7 4,516 + +1.3 4,691 + SMa0005 0.24 +0.3 4,694 + SMa0005 0.24 -0.5 4,695 - SMa0005 0.24 +0.8 4,696 + SMa0005 0.24 -1.0 4,696 + SMa0005 0.24 -0.6 4,696 + SMa0005 0.24 -0.5 4,696 + SMa0005 0.24 +0.1 4,696 + SMa0005 0.24 +0.3 4,697 - SMa0005 0.24 +1.1 4,869 - SMa0005 0.42 -0.7 4,923 + SMa0005 0.47 +4.1 4,976 + -0.9 4,977 - +2.6 4,977 - SMa0005 0.53 +0.7 5,126 + SMa0005 0.68 -0.7 5,128 + SMa0005 0.68 -0.3 5,129 - SMa0005 0.68 -5.1 5,129 - SMa0005 0.68 +0.7 5,129 - SMa0005 0.68 -0.7 5,144 + SMa0005 0.69 +0.6 5,180 + SMa0005 0.73 +0.8 5,180 + SMa0005 0.73 -2.4 5,180 + SMa0005 0.73 -0.3 5,180 + SMa0005 0.73 +0.2 5,180 + SMa0005 0.73 +1.9 5,180 + SMa0005 0.73 -2.4 5,180 + SMa0005 0.73 -2.9 5,180 + SMa0005 0.73 -0.1 5,180 + SMa0005 0.73 -0.6 5,181 - SMa0005 0.73 +0.7 5,181 - SMa0005 0.73 -2.7 5,181 - SMa0005 0.73 +2.8 5,181 - SMa0005 0.73 -1.2 5,181 - SMa0005 0.73 +0.5 5,181 - SMa0005 0.73 -1.1 5,181 - SMa0005 0.73 +1.1 5,213 + SMa0005 0.76 -2.9 5,213 + SMa0005 0.76 -2.3 5,279 + SMa0005 0.83 -0.0 5,279 + SMa0005 0.83 -3.0 5,279 + SMa0005 0.83 +0.6 5,280 - SMa0005 0.83 +0.0 5,280 - SMa0005 0.83 +0.2 5,280 - SMa0005 0.83 +0.9 5,790 + SMa0007 0.53 +0.1 5,790 + SMa0007 0.53 +2.3 5,790 + SMa0007 0.53 -1.3 5,791 - SMa0007 0.53 -4.6 5,791 - SMa0007 0.53 +3.4 5,877 + SMa0007 0.66 -1.0 5,883 + SMa0007 0.67 -1.7 5,884 - SMa0007 0.67 +0.3 5,884 - SMa0007 0.67 +2.9 5,884 - SMa0007 0.67 -1.3 5,884 - SMa0007 0.67 -0.9 5,890 - SMa0007 0.68 -0.3 5,890 - SMa0007 0.68 +1.1 5,890 - SMa0007 0.68 +0.3 5,890 - SMa0007 0.68 -1.0 5,891 + SMa0007 0.68 -1.1 5,891 + +1.1 5,891 + SMa0007 0.68 -2.3 5,892 - SMa0007 0.68 -0.0 5,892 - SMa0007 0.68 +0.1 5,892 - SMa0007 0.68 +1.2 5,892 - SMa0007 0.68 -1.1 5,892 - SMa0007 0.68 -3.0 5,892 - SMa0007 0.68 -0.2 5,977 - SMa0007 0.80 -1.9 5,977 - SMa0007 0.80 -0.3 5,977 - SMa0007 0.80 +0.4 6,166 - +0.8 6,296 + SMa0009 0.16 +0.8 6,297 - SMa0009 0.16 -0.3 6,620 + SMa0009 0.51 -0.2 6,620 + SMa0009 0.51 -1.7 6,620 + SMa0009 0.51 -2.4 6,620 + SMa0009 0.51 +1.9 6,621 - SMa0009 0.51 -2.7 6,621 - SMa0009 0.51 -2.5 6,621 - SMa0009 0.51 +0.9 6,861 - SMa0009 0.77 +0.6 6,944 + SMa0009 0.86 -1.8 7,028 + +0.6 7,028 + -2.6
Or see this region's nucleotide sequence