Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20599 and SM_b20600 are separated by 62 nucleotides SM_b20600 and SM_b21707 are separated by 171 nucleotides SM_b21707 and SM_b20602 are separated by 18 nucleotides SM_b20602 and SM_b20603 are separated by 5 nucleotides
SM_b20599: SM_b20599 - smb01f11-replication protein, at 1,612,756 to 1,613,817
_b20599
SM_b20600: SM_b20600 - hypothetical protein, at 1,613,880 to 1,614,503
_b20600
SM_b21707: SM_b21707 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,614,675 to 1,615,370
_b21707
SM_b20602: SM_b20602 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,615,389 to 1,616,141
_b20602
SM_b20603: SM_b20603 - branched-chain amino acid ABC transporter permease, at 1,616,147 to 1,617,322
_b20603
Position (kb) 1614
1615
1616 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1613.816 kb on - strand at 1613.883 kb on + strand at 1614.099 kb on + strand, within SM_b20600 at 1614.100 kb on - strand, within SM_b20600 at 1614.227 kb on - strand, within SM_b20600 at 1614.264 kb on - strand, within SM_b20600 at 1614.310 kb on - strand, within SM_b20600 at 1614.450 kb on + strand at 1614.685 kb on - strand at 1614.759 kb on - strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.761 kb on - strand, within SM_b21707 at 1614.797 kb on - strand, within SM_b21707 at 1614.797 kb on - strand, within SM_b21707 at 1614.797 kb on - strand, within SM_b21707 at 1614.842 kb on - strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.028 kb on + strand, within SM_b21707 at 1615.028 kb on + strand, within SM_b21707 at 1615.029 kb on - strand, within SM_b21707 at 1615.029 kb on - strand, within SM_b21707 at 1615.132 kb on + strand, within SM_b21707 at 1615.340 kb on - strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.403 kb on - strand at 1615.778 kb on - strand, within SM_b20602 at 1615.778 kb on - strand, within SM_b20602 at 1615.842 kb on - strand, within SM_b20602 at 1616.047 kb on - strand, within SM_b20602 at 1616.110 kb on + strand at 1616.110 kb on + strand at 1616.111 kb on - strand at 1616.111 kb on - strand at 1616.248 kb on - strand at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,613,816 - +0.5 1,613,883 + +0.6 1,614,099 + SM_b20600 0.35 +0.4 1,614,100 - SM_b20600 0.35 -0.6 1,614,227 - SM_b20600 0.56 -3.8 1,614,264 - SM_b20600 0.62 -2.9 1,614,310 - SM_b20600 0.69 -0.5 1,614,450 + -1.6 1,614,685 - +0.5 1,614,759 - SM_b21707 0.12 -2.4 1,614,760 + SM_b21707 0.12 -1.0 1,614,760 + SM_b21707 0.12 -0.8 1,614,760 + SM_b21707 0.12 +0.2 1,614,760 + SM_b21707 0.12 -0.2 1,614,760 + SM_b21707 0.12 -1.1 1,614,761 - SM_b21707 0.12 +2.6 1,614,797 - SM_b21707 0.18 -1.1 1,614,797 - SM_b21707 0.18 +0.4 1,614,797 - SM_b21707 0.18 -0.8 1,614,842 - SM_b21707 0.24 -0.5 1,615,026 + SM_b21707 0.50 -2.0 1,615,026 + SM_b21707 0.50 -0.6 1,615,026 + SM_b21707 0.50 +0.0 1,615,026 + SM_b21707 0.50 -0.7 1,615,027 - SM_b21707 0.51 -0.8 1,615,027 - -0.4 1,615,027 - SM_b21707 0.51 +1.0 1,615,027 - SM_b21707 0.51 +0.1 1,615,027 - SM_b21707 0.51 +0.1 1,615,027 - SM_b21707 0.51 +0.8 1,615,027 - SM_b21707 0.51 +1.0 1,615,027 - SM_b21707 0.51 -2.8 1,615,027 - SM_b21707 0.51 -1.5 1,615,028 + SM_b21707 0.51 -2.6 1,615,028 + SM_b21707 0.51 -2.1 1,615,029 - SM_b21707 0.51 -0.2 1,615,029 - SM_b21707 0.51 -2.9 1,615,132 + SM_b21707 0.66 -4.3 1,615,340 - +0.1 1,615,402 + -1.2 1,615,402 + +0.1 1,615,402 + +1.3 1,615,402 + +0.1 1,615,402 + -0.1 1,615,403 - -2.5 1,615,778 - SM_b20602 0.52 +0.0 1,615,778 - SM_b20602 0.52 +1.7 1,615,842 - SM_b20602 0.60 -0.2 1,616,047 - SM_b20602 0.87 +1.9 1,616,110 + -0.7 1,616,110 + +1.1 1,616,111 - +0.6 1,616,111 - -0.7 1,616,248 - -0.2 1,616,351 + SM_b20603 0.17 +3.2 1,616,351 + SM_b20603 0.17 -0.8 1,616,351 + SM_b20603 0.17 -1.1 1,616,352 - SM_b20603 0.17 +1.0 1,616,352 - SM_b20603 0.17 +0.7
Or see this region's nucleotide sequence