Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21590

Experiment: copper (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21589 and SM_b21590 overlap by 4 nucleotidesSM_b21590 and SM_b21591 are separated by 17 nucleotidesSM_b21591 and SM_b21592 are separated by 145 nucleotides SM_b21589: SM_b21589 - sugar uptake ABC transporter permease, at 1,129,514 to 1,130,539 _b21589 SM_b21590: SM_b21590 - inner membrane ABC transporter permease YjfF, at 1,130,536 to 1,131,504 _b21590 SM_b21591: SM_b21591 - GntR family transcriptional regulator, at 1,131,522 to 1,132,256 _b21591 SM_b21592: SM_b21592 - sugar uptake ABC transporter ATP-binding protein, at 1,132,402 to 1,133,553 _b21592 Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1129.536 kb on - strandat 1129.536 kb on - strandat 1129.643 kb on + strand, within SM_b21589at 1129.644 kb on - strand, within SM_b21589at 1129.651 kb on + strand, within SM_b21589at 1129.651 kb on + strand, within SM_b21589at 1129.965 kb on + strand, within SM_b21589at 1129.966 kb on - strand, within SM_b21589at 1129.966 kb on - strand, within SM_b21589at 1129.966 kb on - strand, within SM_b21589at 1130.174 kb on + strand, within SM_b21589at 1130.174 kb on + strand, within SM_b21589at 1130.175 kb on - strand, within SM_b21589at 1130.175 kb on - strand, within SM_b21589at 1130.259 kb on + strand, within SM_b21589at 1130.259 kb on + strand, within SM_b21589at 1130.260 kb on - strand, within SM_b21589at 1130.260 kb on - strand, within SM_b21589at 1130.611 kb on + strandat 1130.866 kb on + strand, within SM_b21590at 1130.866 kb on + strand, within SM_b21590at 1130.866 kb on + strand, within SM_b21590at 1130.867 kb on - strand, within SM_b21590at 1130.992 kb on + strand, within SM_b21590at 1131.099 kb on + strand, within SM_b21590at 1131.099 kb on + strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.103 kb on + strand, within SM_b21590at 1131.104 kb on - strand, within SM_b21590at 1131.104 kb on - strand, within SM_b21590at 1131.104 kb on - strand, within SM_b21590at 1131.176 kb on - strand, within SM_b21590at 1131.176 kb on - strand, within SM_b21590at 1131.227 kb on - strand, within SM_b21590at 1131.227 kb on - strand, within SM_b21590at 1131.229 kb on - strand, within SM_b21590at 1131.229 kb on - strand, within SM_b21590at 1131.376 kb on + strand, within SM_b21590at 1131.376 kb on + strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.668 kb on - strand, within SM_b21591at 1131.870 kb on + strand, within SM_b21591at 1132.137 kb on - strand, within SM_b21591at 1132.343 kb on + strandat 1132.343 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
remove
1,129,536 - -0.3
1,129,536 - -0.1
1,129,643 + SM_b21589 0.13 +0.8
1,129,644 - SM_b21589 0.13 +1.0
1,129,651 + SM_b21589 0.13 +0.7
1,129,651 + SM_b21589 0.13 -0.5
1,129,965 + SM_b21589 0.44 -3.2
1,129,966 - SM_b21589 0.44 +0.4
1,129,966 - SM_b21589 0.44 -2.2
1,129,966 - SM_b21589 0.44 +0.4
1,130,174 + SM_b21589 0.64 -0.5
1,130,174 + SM_b21589 0.64 -0.8
1,130,175 - SM_b21589 0.64 +0.3
1,130,175 - SM_b21589 0.64 -3.7
1,130,259 + SM_b21589 0.73 -3.0
1,130,259 + SM_b21589 0.73 -1.5
1,130,260 - SM_b21589 0.73 -0.9
1,130,260 - SM_b21589 0.73 +1.3
1,130,611 + +0.3
1,130,866 + SM_b21590 0.34 +0.1
1,130,866 + SM_b21590 0.34 +0.8
1,130,866 + SM_b21590 0.34 +0.2
1,130,867 - SM_b21590 0.34 +2.1
1,130,992 + SM_b21590 0.47 -2.0
1,131,099 + SM_b21590 0.58 -2.5
1,131,099 + SM_b21590 0.58 -0.1
1,131,100 - SM_b21590 0.58 +1.6
1,131,100 - SM_b21590 0.58 +0.3
1,131,100 - SM_b21590 0.58 -2.0
1,131,100 - SM_b21590 0.58 -1.7
1,131,100 - SM_b21590 0.58 -0.1
1,131,103 + SM_b21590 0.59 +0.0
1,131,104 - SM_b21590 0.59 -0.0
1,131,104 - SM_b21590 0.59 -0.7
1,131,104 - SM_b21590 0.59 +1.0
1,131,176 - SM_b21590 0.66 -2.6
1,131,176 - SM_b21590 0.66 +1.0
1,131,227 - SM_b21590 0.71 -0.3
1,131,227 - SM_b21590 0.71 +0.8
1,131,229 - SM_b21590 0.72 +0.3
1,131,229 - SM_b21590 0.72 -0.1
1,131,376 + SM_b21590 0.87 +0.7
1,131,376 + SM_b21590 0.87 +0.7
1,131,377 - SM_b21590 0.87 +1.4
1,131,377 - SM_b21590 0.87 -0.1
1,131,377 - SM_b21590 0.87 -0.6
1,131,377 - SM_b21590 0.87 +0.6
1,131,377 - SM_b21590 0.87 +1.6
1,131,377 - SM_b21590 0.87 +0.7
1,131,377 - SM_b21590 0.87 +0.8
1,131,377 - SM_b21590 0.87 +0.3
1,131,668 - SM_b21591 0.20 +0.1
1,131,870 + SM_b21591 0.47 +0.4
1,132,137 - SM_b21591 0.84 -1.5
1,132,343 + +1.8
1,132,343 + -0.9

Or see this region's nucleotide sequence