Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21346 and SM_b21347 are separated by 72 nucleotides SM_b21347 and SM_b21348 are separated by 9 nucleotides SM_b21348 and SM_b21349 overlap by 4 nucleotides
SM_b21346: SM_b21346 - LacI family transcriptional regulator, at 1,012,574 to 1,013,626
_b21346
SM_b21347: SM_b21347 - pectin degradation protein, at 1,013,699 to 1,014,037
_b21347
SM_b21348: SM_b21348 - 2-deoxy-D-gluconate 3-dehydrogenase, at 1,014,047 to 1,014,811
_b21348
SM_b21349: SM_b21349 - 5-keto-4-deoxyuronate isomerase, at 1,014,808 to 1,015,656
_b21349
Position (kb)
1013
1014
1015 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1012.765 kb on - strand, within SM_b21346 at 1012.765 kb on - strand, within SM_b21346 at 1012.785 kb on + strand, within SM_b21346 at 1012.785 kb on + strand, within SM_b21346 at 1012.785 kb on + strand, within SM_b21346 at 1012.833 kb on - strand, within SM_b21346 at 1013.255 kb on + strand, within SM_b21346 at 1013.396 kb on + strand, within SM_b21346 at 1013.397 kb on - strand, within SM_b21346 at 1013.397 kb on - strand, within SM_b21346 at 1013.421 kb on - strand, within SM_b21346 at 1013.459 kb on + strand, within SM_b21346 at 1013.557 kb on - strand at 1013.676 kb on + strand at 1013.700 kb on + strand at 1013.766 kb on - strand, within SM_b21347 at 1013.865 kb on + strand, within SM_b21347 at 1013.866 kb on - strand, within SM_b21347 at 1014.096 kb on + strand at 1014.097 kb on - strand at 1014.097 kb on - strand at 1014.097 kb on - strand at 1014.172 kb on + strand, within SM_b21348 at 1014.173 kb on - strand, within SM_b21348 at 1014.336 kb on + strand, within SM_b21348 at 1014.337 kb on - strand, within SM_b21348 at 1014.337 kb on - strand, within SM_b21348 at 1014.689 kb on + strand, within SM_b21348 at 1014.733 kb on + strand, within SM_b21348 at 1014.847 kb on - strand at 1014.847 kb on - strand at 1014.848 kb on + strand at 1014.849 kb on - strand at 1014.855 kb on + strand at 1014.856 kb on - strand at 1014.887 kb on + strand at 1014.887 kb on + strand at 1014.887 kb on + strand at 1014.888 kb on - strand at 1014.955 kb on + strand, within SM_b21349 at 1014.955 kb on + strand, within SM_b21349 at 1014.956 kb on - strand, within SM_b21349 at 1014.956 kb on - strand, within SM_b21349 at 1015.025 kb on + strand, within SM_b21349 at 1015.031 kb on + strand, within SM_b21349 at 1015.031 kb on + strand, within SM_b21349 at 1015.032 kb on - strand, within SM_b21349 at 1015.032 kb on - strand, within SM_b21349
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,012,765 - SM_b21346 0.18 -2.1 1,012,765 - SM_b21346 0.18 +1.2 1,012,785 + SM_b21346 0.20 +0.1 1,012,785 + SM_b21346 0.20 -1.2 1,012,785 + SM_b21346 0.20 -2.8 1,012,833 - SM_b21346 0.25 +0.7 1,013,255 + SM_b21346 0.65 -3.6 1,013,396 + SM_b21346 0.78 +0.6 1,013,397 - SM_b21346 0.78 -0.2 1,013,397 - SM_b21346 0.78 +1.7 1,013,421 - SM_b21346 0.80 -1.2 1,013,459 + SM_b21346 0.84 +1.7 1,013,557 - -1.2 1,013,676 + -0.3 1,013,700 + -0.7 1,013,766 - SM_b21347 0.20 -1.0 1,013,865 + SM_b21347 0.49 -0.5 1,013,866 - SM_b21347 0.49 -3.8 1,014,096 + -0.6 1,014,097 - +0.3 1,014,097 - -2.1 1,014,097 - -0.7 1,014,172 + SM_b21348 0.16 +1.1 1,014,173 - SM_b21348 0.16 -1.3 1,014,336 + SM_b21348 0.38 -3.1 1,014,337 - SM_b21348 0.38 -0.3 1,014,337 - SM_b21348 0.38 +0.2 1,014,689 + SM_b21348 0.84 +0.0 1,014,733 + SM_b21348 0.90 +0.4 1,014,847 - +0.5 1,014,847 - -3.4 1,014,848 + -2.5 1,014,849 - -2.9 1,014,855 + +0.9 1,014,856 - -0.9 1,014,887 + -3.7 1,014,887 + -0.7 1,014,887 + -0.6 1,014,888 - +0.3 1,014,955 + SM_b21349 0.17 +0.2 1,014,955 + SM_b21349 0.17 +1.3 1,014,956 - SM_b21349 0.17 -1.2 1,014,956 - SM_b21349 0.17 -2.8 1,015,025 + SM_b21349 0.26 +0.5 1,015,031 + SM_b21349 0.26 -1.3 1,015,031 + SM_b21349 0.26 +0.4 1,015,032 - SM_b21349 0.26 +0.3 1,015,032 - SM_b21349 0.26 +0.8
Or see this region's nucleotide sequence