Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21263

Experiment: copper (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21262 and SM_b21263 are separated by 80 nucleotidesSM_b21263 and SM_b21264 are separated by 79 nucleotides SM_b21262: SM_b21262 - mureinpeptideoligopeptide ABC transporter permease, at 834,894 to 835,892 _b21262 SM_b21263: SM_b21263 - mureinpeptideoligopeptide ABC transporter permease, at 835,973 to 837,064 _b21263 SM_b21264: SM_b21264 - hypothetical protein, at 837,144 to 838,358 _b21264 Position (kb) 835 836 837 838Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 835.005 kb on + strand, within SM_b21262at 835.006 kb on - strand, within SM_b21262at 835.006 kb on - strand, within SM_b21262at 835.044 kb on - strand, within SM_b21262at 835.074 kb on + strand, within SM_b21262at 835.074 kb on + strand, within SM_b21262at 835.075 kb on - strand, within SM_b21262at 835.075 kb on - strand, within SM_b21262at 835.075 kb on - strand, within SM_b21262at 835.075 kb on - strand, within SM_b21262at 835.105 kb on - strand, within SM_b21262at 835.266 kb on + strand, within SM_b21262at 835.266 kb on + strand, within SM_b21262at 835.267 kb on - strand, within SM_b21262at 835.267 kb on - strand, within SM_b21262at 835.284 kb on + strand, within SM_b21262at 835.299 kb on + strand, within SM_b21262at 835.368 kb on + strand, within SM_b21262at 835.368 kb on + strand, within SM_b21262at 835.368 kb on + strand, within SM_b21262at 835.368 kb on + strand, within SM_b21262at 835.369 kb on - strand, within SM_b21262at 835.369 kb on - strand, within SM_b21262at 835.369 kb on - strand, within SM_b21262at 835.422 kb on + strand, within SM_b21262at 835.422 kb on + strand, within SM_b21262at 835.423 kb on - strand, within SM_b21262at 835.473 kb on - strand, within SM_b21262at 835.473 kb on - strand, within SM_b21262at 835.473 kb on - strand, within SM_b21262at 835.508 kb on + strand, within SM_b21262at 835.566 kb on + strand, within SM_b21262at 835.566 kb on + strand, within SM_b21262at 835.566 kb on + strand, within SM_b21262at 835.770 kb on + strand, within SM_b21262at 835.770 kb on + strand, within SM_b21262at 835.770 kb on + strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.771 kb on - strand, within SM_b21262at 835.932 kb on - strandat 835.958 kb on + strandat 836.085 kb on - strand, within SM_b21263at 836.085 kb on - strand, within SM_b21263at 836.120 kb on + strand, within SM_b21263at 836.154 kb on - strand, within SM_b21263at 836.154 kb on - strand, within SM_b21263at 836.154 kb on - strand, within SM_b21263at 836.269 kb on + strand, within SM_b21263at 836.270 kb on - strand, within SM_b21263at 836.645 kb on + strand, within SM_b21263at 836.646 kb on - strand, within SM_b21263at 836.656 kb on - strand, within SM_b21263at 836.667 kb on + strand, within SM_b21263at 836.738 kb on + strand, within SM_b21263at 836.738 kb on + strand, within SM_b21263at 836.738 kb on + strand, within SM_b21263at 836.963 kb on + strandat 836.963 kb on + strandat 836.964 kb on - strandat 836.964 kb on - strandat 837.007 kb on - strandat 837.057 kb on - strandat 837.103 kb on + strandat 837.143 kb on + strandat 837.180 kb on + strandat 837.180 kb on + strandat 837.180 kb on + strandat 837.180 kb on + strandat 837.181 kb on - strandat 837.181 kb on - strandat 837.191 kb on + strandat 837.252 kb on + strandat 837.252 kb on + strandat 837.253 kb on - strandat 837.349 kb on + strand, within SM_b21264at 837.350 kb on - strand, within SM_b21264at 837.369 kb on + strand, within SM_b21264at 837.369 kb on + strand, within SM_b21264at 837.369 kb on + strand, within SM_b21264at 837.370 kb on - strand, within SM_b21264at 837.370 kb on - strand, within SM_b21264at 837.371 kb on + strand, within SM_b21264at 837.371 kb on + strand, within SM_b21264at 837.372 kb on - strand, within SM_b21264at 837.513 kb on - strand, within SM_b21264at 837.513 kb on - strand, within SM_b21264at 837.522 kb on + strand, within SM_b21264at 837.640 kb on - strand, within SM_b21264at 837.675 kb on + strand, within SM_b21264at 837.676 kb on - strand, within SM_b21264at 837.780 kb on - strand, within SM_b21264at 837.795 kb on + strand, within SM_b21264at 837.795 kb on + strand, within SM_b21264at 837.795 kb on + strand, within SM_b21264at 837.799 kb on + strand, within SM_b21264at 837.799 kb on + strand, within SM_b21264at 837.799 kb on + strand, within SM_b21264at 837.862 kb on - strand, within SM_b21264at 837.887 kb on + strand, within SM_b21264at 837.887 kb on + strand, within SM_b21264at 837.912 kb on + strand, within SM_b21264at 837.913 kb on - strand, within SM_b21264at 837.976 kb on + strand, within SM_b21264at 837.976 kb on + strand, within SM_b21264at 837.977 kb on - strand, within SM_b21264at 838.054 kb on - strand, within SM_b21264

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
remove
835,005 + SM_b21262 0.11 -3.0
835,006 - SM_b21262 0.11 -0.9
835,006 - SM_b21262 0.11 +0.0
835,044 - SM_b21262 0.15 +0.3
835,074 + SM_b21262 0.18 +1.4
835,074 + SM_b21262 0.18 +0.2
835,075 - SM_b21262 0.18 -0.3
835,075 - SM_b21262 0.18 -0.6
835,075 - SM_b21262 0.18 -1.3
835,075 - SM_b21262 0.18 -2.5
835,105 - SM_b21262 0.21 -0.6
835,266 + SM_b21262 0.37 +0.8
835,266 + SM_b21262 0.37 +0.0
835,267 - SM_b21262 0.37 +0.3
835,267 - SM_b21262 0.37 +0.8
835,284 + SM_b21262 0.39 -3.8
835,299 + SM_b21262 0.41 +1.0
835,368 + SM_b21262 0.47 +0.2
835,368 + SM_b21262 0.47 -0.4
835,368 + SM_b21262 0.47 -4.2
835,368 + SM_b21262 0.47 +0.1
835,369 - SM_b21262 0.48 -1.6
835,369 - SM_b21262 0.48 +0.3
835,369 - SM_b21262 0.48 +0.3
835,422 + SM_b21262 0.53 -2.8
835,422 + SM_b21262 0.53 -1.5
835,423 - SM_b21262 0.53 -0.4
835,473 - SM_b21262 0.58 -0.4
835,473 - SM_b21262 0.58 -3.8
835,473 - SM_b21262 0.58 +0.1
835,508 + SM_b21262 0.61 +0.5
835,566 + SM_b21262 0.67 -0.2
835,566 + SM_b21262 0.67 -1.4
835,566 + SM_b21262 0.67 +0.3
835,770 + SM_b21262 0.88 -0.8
835,770 + SM_b21262 0.88 +1.1
835,770 + SM_b21262 0.88 +0.4
835,771 - SM_b21262 0.88 -0.6
835,771 - SM_b21262 0.88 -1.5
835,771 - SM_b21262 0.88 -0.5
835,771 - SM_b21262 0.88 -3.6
835,771 - SM_b21262 0.88 +1.5
835,771 - SM_b21262 0.88 +0.7
835,771 - SM_b21262 0.88 -1.2
835,932 - +0.9
835,958 + +0.5
836,085 - SM_b21263 0.10 -3.8
836,085 - SM_b21263 0.10 +0.6
836,120 + SM_b21263 0.13 -0.1
836,154 - SM_b21263 0.17 -2.5
836,154 - SM_b21263 0.17 +0.2
836,154 - SM_b21263 0.17 +0.5
836,269 + SM_b21263 0.27 -0.6
836,270 - SM_b21263 0.27 -0.2
836,645 + SM_b21263 0.62 -0.7
836,646 - SM_b21263 0.62 -0.5
836,656 - SM_b21263 0.63 -3.0
836,667 + SM_b21263 0.64 -4.1
836,738 + SM_b21263 0.70 +0.1
836,738 + SM_b21263 0.70 +0.6
836,738 + SM_b21263 0.70 -1.2
836,963 + -0.6
836,963 + -0.1
836,964 - +1.5
836,964 - -3.6
837,007 - -4.6
837,057 - -0.8
837,103 + +0.5
837,143 + +0.4
837,180 + +0.7
837,180 + +1.1
837,180 + +1.0
837,180 + -0.4
837,181 - +0.1
837,181 - +3.0
837,191 + +1.1
837,252 + +1.0
837,252 + +0.2
837,253 - +1.8
837,349 + SM_b21264 0.17 -1.5
837,350 - SM_b21264 0.17 +1.1
837,369 + SM_b21264 0.19 +0.5
837,369 + SM_b21264 0.19 +0.9
837,369 + SM_b21264 0.19 -1.2
837,370 - SM_b21264 0.19 +0.0
837,370 - SM_b21264 0.19 +1.0
837,371 + SM_b21264 0.19 -0.2
837,371 + SM_b21264 0.19 +0.5
837,372 - SM_b21264 0.19 +1.1
837,513 - SM_b21264 0.30 +0.6
837,513 - SM_b21264 0.30 +1.8
837,522 + SM_b21264 0.31 +0.6
837,640 - SM_b21264 0.41 +2.5
837,675 + SM_b21264 0.44 -0.7
837,676 - SM_b21264 0.44 +0.6
837,780 - SM_b21264 0.52 +1.2
837,795 + SM_b21264 0.54 +0.4
837,795 + SM_b21264 0.54 +1.1
837,795 + SM_b21264 0.54 -3.1
837,799 + SM_b21264 0.54 +1.7
837,799 + SM_b21264 0.54 +1.2
837,799 + SM_b21264 0.54 +1.1
837,862 - SM_b21264 0.59 +0.7
837,887 + SM_b21264 0.61 +0.3
837,887 + SM_b21264 0.61 -0.9
837,912 + SM_b21264 0.63 +0.5
837,913 - SM_b21264 0.63 +1.3
837,976 + SM_b21264 0.68 +0.2
837,976 + SM_b21264 0.68 +0.2
837,977 - SM_b21264 0.69 +0.9
838,054 - SM_b21264 0.75 +1.9

Or see this region's nucleotide sequence