Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21209 and SM_b21210 overlap by 4 nucleotides SM_b21210 and SM_b21211 are separated by 208 nucleotides
SM_b21209: SM_b21209 - two-component sensor histidine kinase, at 961,787 to 963,139
_b21209
SM_b21210: SM_b21210 - two-component response regulator protein, at 963,136 to 963,807
_b21210
SM_b21211: SM_b21211 - hypothetical protein, at 964,016 to 965,782
_b21211
Position (kb) 963
964 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 962.269 kb on + strand, within SM_b21209 at 962.650 kb on - strand, within SM_b21209 at 962.654 kb on - strand, within SM_b21209 at 962.655 kb on + strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.877 kb on + strand, within SM_b21209 at 962.877 kb on + strand, within SM_b21209 at 962.878 kb on - strand, within SM_b21209 at 962.878 kb on - strand, within SM_b21209 at 962.908 kb on - strand, within SM_b21209 at 963.033 kb on + strand at 963.034 kb on - strand at 963.034 kb on - strand at 963.384 kb on + strand, within SM_b21210 at 963.384 kb on + strand, within SM_b21210 at 963.407 kb on + strand, within SM_b21210 at 963.408 kb on - strand, within SM_b21210 at 963.439 kb on + strand, within SM_b21210 at 963.440 kb on - strand, within SM_b21210 at 963.441 kb on + strand, within SM_b21210 at 963.441 kb on + strand, within SM_b21210 at 963.442 kb on - strand, within SM_b21210 at 963.484 kb on - strand, within SM_b21210 at 963.547 kb on - strand, within SM_b21210 at 963.852 kb on + strand at 963.853 kb on - strand at 963.912 kb on + strand at 964.090 kb on + strand at 964.090 kb on + strand at 964.091 kb on - strand at 964.091 kb on - strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.093 kb on - strand at 964.093 kb on - strand at 964.093 kb on - strand at 964.214 kb on + strand, within SM_b21211 at 964.215 kb on - strand, within SM_b21211 at 964.257 kb on - strand, within SM_b21211 at 964.257 kb on - strand, within SM_b21211 at 964.310 kb on + strand, within SM_b21211 at 964.338 kb on + strand, within SM_b21211 at 964.338 kb on + strand, within SM_b21211 at 964.339 kb on - strand, within SM_b21211 at 964.553 kb on + strand, within SM_b21211 at 964.553 kb on + strand, within SM_b21211 at 964.553 kb on + strand, within SM_b21211 at 964.554 kb on - strand, within SM_b21211 at 964.554 kb on - strand, within SM_b21211 at 964.577 kb on + strand, within SM_b21211 at 964.594 kb on + strand, within SM_b21211 at 964.594 kb on + strand, within SM_b21211 at 964.595 kb on - strand, within SM_b21211 at 964.595 kb on - strand, within SM_b21211 at 964.686 kb on + strand, within SM_b21211 at 964.758 kb on + strand, within SM_b21211 at 964.758 kb on + strand, within SM_b21211 at 964.759 kb on - strand, within SM_b21211 at 964.759 kb on - strand, within SM_b21211
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 962,269 + SM_b21209 0.36 +0.4 962,650 - SM_b21209 0.64 +0.3 962,654 - SM_b21209 0.64 +1.6 962,655 + SM_b21209 0.64 -0.9 962,656 - SM_b21209 0.64 -2.4 962,656 - SM_b21209 0.64 -0.6 962,656 - SM_b21209 0.64 +0.4 962,656 - SM_b21209 0.64 -2.6 962,656 - SM_b21209 0.64 -0.6 962,656 - SM_b21209 0.64 +1.0 962,877 + SM_b21209 0.81 -1.9 962,877 + SM_b21209 0.81 -0.3 962,878 - SM_b21209 0.81 -0.9 962,878 - SM_b21209 0.81 +0.4 962,908 - SM_b21209 0.83 -0.1 963,033 + -0.9 963,034 - -0.1 963,034 - -2.6 963,384 + SM_b21210 0.37 -2.8 963,384 + SM_b21210 0.37 -2.1 963,407 + SM_b21210 0.40 -1.3 963,408 - SM_b21210 0.40 +0.3 963,439 + SM_b21210 0.45 -3.6 963,440 - SM_b21210 0.45 -1.7 963,441 + SM_b21210 0.45 -4.2 963,441 + SM_b21210 0.45 -2.8 963,442 - SM_b21210 0.46 -0.9 963,484 - SM_b21210 0.52 -0.4 963,547 - SM_b21210 0.61 +0.8 963,852 + -3.7 963,853 - +0.5 963,912 + -3.1 964,090 + -3.2 964,090 + +0.5 964,091 - -0.3 964,091 - -1.4 964,092 + +0.6 964,092 + -1.5 964,092 + -3.7 964,092 + -0.2 964,092 + -0.3 964,092 + +0.0 964,093 - +0.4 964,093 - +1.0 964,093 - +0.6 964,214 + SM_b21211 0.11 +1.0 964,215 - SM_b21211 0.11 -0.8 964,257 - SM_b21211 0.14 +1.8 964,257 - SM_b21211 0.14 +0.2 964,310 + SM_b21211 0.17 +0.9 964,338 + SM_b21211 0.18 +0.6 964,338 + SM_b21211 0.18 +2.9 964,339 - SM_b21211 0.18 -0.2 964,553 + SM_b21211 0.30 -0.2 964,553 + SM_b21211 0.30 -3.1 964,553 + SM_b21211 0.30 -0.2 964,554 - SM_b21211 0.30 -3.9 964,554 - SM_b21211 0.30 +0.4 964,577 + SM_b21211 0.32 -0.0 964,594 + SM_b21211 0.33 -1.7 964,594 + SM_b21211 0.33 +1.3 964,595 - SM_b21211 0.33 -1.7 964,595 - SM_b21211 0.33 -3.9 964,686 + SM_b21211 0.38 +0.9 964,758 + SM_b21211 0.42 +0.5 964,758 + SM_b21211 0.42 +0.3 964,759 - SM_b21211 0.42 -1.7 964,759 - SM_b21211 0.42 -0.9
Or see this region's nucleotide sequence