Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21207

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21206 and SM_b21207 overlap by 1 nucleotidesSM_b21207 and SM_b21208 overlap by 4 nucleotidesSM_b21208 and SM_b21209 are separated by 95 nucleotides SM_b21206: SM_b21206 - ABC transporter ATP-binding protein, at 958,220 to 959,968 _b21206 SM_b21207: SM_b21207 - hypothetical protein, at 959,968 to 960,972 _b21207 SM_b21208: SM_b21208 - TetR family transcriptional regulator, at 960,969 to 961,691 _b21208 SM_b21209: SM_b21209 - two-component sensor histidine kinase, at 961,787 to 963,139 _b21209 Position (kb) 959 960 961Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 959.047 kb on + strand, within SM_b21206at 959.358 kb on + strand, within SM_b21206at 959.695 kb on + strand, within SM_b21206at 959.695 kb on + strand, within SM_b21206at 959.695 kb on + strand, within SM_b21206at 959.696 kb on - strand, within SM_b21206at 959.696 kb on - strand, within SM_b21206at 959.697 kb on + strand, within SM_b21206at 959.698 kb on - strand, within SM_b21206at 959.756 kb on + strand, within SM_b21206at 959.756 kb on + strand, within SM_b21206at 959.756 kb on + strand, within SM_b21206at 959.757 kb on - strand, within SM_b21206at 959.757 kb on - strand, within SM_b21206at 960.149 kb on + strand, within SM_b21207at 960.149 kb on + strand, within SM_b21207at 960.149 kb on + strand, within SM_b21207at 960.150 kb on - strand, within SM_b21207at 960.150 kb on - strand, within SM_b21207at 960.150 kb on - strand, within SM_b21207at 960.150 kb on - strand, within SM_b21207at 960.153 kb on + strand, within SM_b21207at 960.154 kb on - strand, within SM_b21207at 960.154 kb on - strand, within SM_b21207at 960.231 kb on - strand, within SM_b21207at 960.231 kb on - strand, within SM_b21207at 960.231 kb on - strand, within SM_b21207at 960.270 kb on - strand, within SM_b21207at 960.270 kb on - strand, within SM_b21207at 960.270 kb on - strand, within SM_b21207at 960.276 kb on + strand, within SM_b21207at 960.424 kb on + strand, within SM_b21207at 960.425 kb on - strand, within SM_b21207at 960.543 kb on + strand, within SM_b21207at 960.544 kb on - strand, within SM_b21207at 960.604 kb on + strand, within SM_b21207at 960.605 kb on - strand, within SM_b21207at 961.078 kb on + strand, within SM_b21208at 961.079 kb on - strand, within SM_b21208at 961.223 kb on + strand, within SM_b21208at 961.223 kb on + strand, within SM_b21208at 961.224 kb on - strand, within SM_b21208at 961.228 kb on + strand, within SM_b21208at 961.228 kb on + strand, within SM_b21208at 961.229 kb on - strand, within SM_b21208at 961.477 kb on + strand, within SM_b21208at 961.477 kb on + strand, within SM_b21208at 961.477 kb on + strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.681 kb on + strandat 961.811 kb on - strandat 961.927 kb on - strand, within SM_b21209

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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959,047 + SM_b21206 0.47 +0.4
959,358 + SM_b21206 0.65 +1.1
959,695 + SM_b21206 0.84 +0.9
959,695 + SM_b21206 0.84 -0.9
959,695 + SM_b21206 0.84 +0.1
959,696 - SM_b21206 0.84 -1.2
959,696 - SM_b21206 0.84 -1.2
959,697 + SM_b21206 0.84 +2.5
959,698 - SM_b21206 0.85 +0.7
959,756 + SM_b21206 0.88 +0.2
959,756 + SM_b21206 0.88 -0.2
959,756 + SM_b21206 0.88 -2.0
959,757 - SM_b21206 0.88 +0.4
959,757 - SM_b21206 0.88 +0.5
960,149 + SM_b21207 0.18 -0.3
960,149 + SM_b21207 0.18 +1.3
960,149 + SM_b21207 0.18 +0.5
960,150 - SM_b21207 0.18 -0.3
960,150 - SM_b21207 0.18 +0.0
960,150 - SM_b21207 0.18 +0.8
960,150 - SM_b21207 0.18 -2.5
960,153 + SM_b21207 0.18 +0.4
960,154 - SM_b21207 0.19 -0.5
960,154 - SM_b21207 0.19 -2.1
960,231 - SM_b21207 0.26 -1.2
960,231 - SM_b21207 0.26 -2.5
960,231 - SM_b21207 0.26 -0.9
960,270 - SM_b21207 0.30 -1.2
960,270 - SM_b21207 0.30 -4.4
960,270 - SM_b21207 0.30 -0.4
960,276 + SM_b21207 0.31 -0.5
960,424 + SM_b21207 0.45 -0.0
960,425 - SM_b21207 0.45 +0.7
960,543 + SM_b21207 0.57 +0.9
960,544 - SM_b21207 0.57 -0.1
960,604 + SM_b21207 0.63 -0.5
960,605 - SM_b21207 0.63 -0.7
961,078 + SM_b21208 0.15 -0.1
961,079 - SM_b21208 0.15 -2.7
961,223 + SM_b21208 0.35 +0.0
961,223 + SM_b21208 0.35 -2.6
961,224 - SM_b21208 0.35 +0.7
961,228 + SM_b21208 0.36 -3.2
961,228 + SM_b21208 0.36 +2.0
961,229 - SM_b21208 0.36 +0.4
961,477 + SM_b21208 0.70 +0.1
961,477 + SM_b21208 0.70 +1.9
961,477 + SM_b21208 0.70 -2.0
961,478 - SM_b21208 0.70 +1.7
961,478 - SM_b21208 0.70 +1.5
961,478 - SM_b21208 0.70 -2.3
961,478 - SM_b21208 0.70 -1.2
961,478 - SM_b21208 0.70 -0.9
961,681 + +1.2
961,811 - +0.4
961,927 - SM_b21209 0.10 +1.5

Or see this region's nucleotide sequence