Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21185

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21184 and SM_b21185 are separated by 36 nucleotidesSM_b21185 and SM_b21186 are separated by 115 nucleotides SM_b21184: SM_b21184 - acetate kinase, at 932,547 to 933,725 _b21184 SM_b21185: SM_b21185 - succinate-semialdehyde dehydrogenase (NAD(P)+) protein, at 933,762 to 935,237 _b21185 SM_b21186: SM_b21186 - 4-aminobutyrate aminotransferase, at 935,353 to 936,621 _b21186 Position (kb) 933 934 935 936Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 932.842 kb on - strand, within SM_b21184at 933.030 kb on + strand, within SM_b21184at 933.031 kb on - strand, within SM_b21184at 933.051 kb on + strand, within SM_b21184at 933.051 kb on + strand, within SM_b21184at 933.051 kb on + strand, within SM_b21184at 933.052 kb on - strand, within SM_b21184at 933.099 kb on + strand, within SM_b21184at 933.099 kb on + strand, within SM_b21184at 933.099 kb on + strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.101 kb on + strand, within SM_b21184at 933.101 kb on + strand, within SM_b21184at 933.314 kb on + strand, within SM_b21184at 933.314 kb on + strand, within SM_b21184at 933.314 kb on + strand, within SM_b21184at 933.524 kb on + strand, within SM_b21184at 933.699 kb on - strandat 933.741 kb on + strandat 933.741 kb on + strandat 933.741 kb on + strandat 933.784 kb on + strandat 933.785 kb on - strandat 933.799 kb on + strandat 933.799 kb on + strandat 933.800 kb on - strandat 933.800 kb on - strandat 933.891 kb on - strandat 933.979 kb on + strand, within SM_b21185at 933.979 kb on + strand, within SM_b21185at 933.979 kb on + strand, within SM_b21185at 933.980 kb on - strand, within SM_b21185at 933.980 kb on - strand, within SM_b21185at 933.987 kb on - strand, within SM_b21185at 934.095 kb on - strand, within SM_b21185at 934.170 kb on + strand, within SM_b21185at 934.327 kb on + strand, within SM_b21185at 934.327 kb on + strand, within SM_b21185at 934.328 kb on - strand, within SM_b21185at 934.588 kb on + strand, within SM_b21185at 934.589 kb on - strand, within SM_b21185at 934.770 kb on + strand, within SM_b21185at 934.800 kb on - strand, within SM_b21185at 934.800 kb on - strand, within SM_b21185at 934.873 kb on + strand, within SM_b21185at 934.873 kb on + strand, within SM_b21185at 934.874 kb on - strand, within SM_b21185at 934.874 kb on - strand, within SM_b21185at 935.103 kb on + strandat 935.104 kb on - strandat 935.283 kb on + strandat 935.283 kb on + strandat 935.284 kb on - strandat 935.284 kb on - strandat 935.385 kb on + strandat 935.739 kb on - strand, within SM_b21186at 935.739 kb on - strand, within SM_b21186at 935.739 kb on - strand, within SM_b21186at 935.987 kb on + strand, within SM_b21186at 936.168 kb on - strand, within SM_b21186at 936.168 kb on - strand, within SM_b21186at 936.168 kb on - strand, within SM_b21186

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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932,842 - SM_b21184 0.25 -1.5
933,030 + SM_b21184 0.41 +0.6
933,031 - SM_b21184 0.41 -3.1
933,051 + SM_b21184 0.43 -4.1
933,051 + SM_b21184 0.43 -3.5
933,051 + SM_b21184 0.43 -0.0
933,052 - SM_b21184 0.43 +0.8
933,099 + SM_b21184 0.47 -0.0
933,099 + SM_b21184 0.47 +1.1
933,099 + SM_b21184 0.47 -0.9
933,100 - SM_b21184 0.47 -0.5
933,100 - SM_b21184 0.47 +0.5
933,100 - SM_b21184 0.47 +0.8
933,100 - SM_b21184 0.47 +1.2
933,101 + SM_b21184 0.47 -0.9
933,101 + SM_b21184 0.47 -2.6
933,314 + SM_b21184 0.65 -1.3
933,314 + SM_b21184 0.65 +0.8
933,314 + SM_b21184 0.65 +0.8
933,524 + SM_b21184 0.83 -1.0
933,699 - -2.6
933,741 + +0.8
933,741 + -3.9
933,741 + -1.2
933,784 + +2.5
933,785 - -2.2
933,799 + +0.1
933,799 + +0.4
933,800 - +0.1
933,800 - -1.4
933,891 - +0.7
933,979 + SM_b21185 0.15 -0.7
933,979 + SM_b21185 0.15 +0.5
933,979 + SM_b21185 0.15 -1.6
933,980 - SM_b21185 0.15 -1.2
933,980 - SM_b21185 0.15 -2.7
933,987 - SM_b21185 0.15 +0.3
934,095 - SM_b21185 0.23 -3.3
934,170 + SM_b21185 0.28 -2.6
934,327 + SM_b21185 0.38 -0.0
934,327 + SM_b21185 0.38 -3.6
934,328 - SM_b21185 0.38 -0.2
934,588 + SM_b21185 0.56 -1.4
934,589 - SM_b21185 0.56 -0.6
934,770 + SM_b21185 0.68 -2.8
934,800 - SM_b21185 0.70 -2.4
934,800 - SM_b21185 0.70 +1.8
934,873 + SM_b21185 0.75 -0.1
934,873 + SM_b21185 0.75 -0.6
934,874 - SM_b21185 0.75 -0.2
934,874 - SM_b21185 0.75 -2.7
935,103 + +0.9
935,104 - +0.8
935,283 + +0.1
935,283 + -2.5
935,284 - +0.1
935,284 - -0.9
935,385 + +0.4
935,739 - SM_b21186 0.30 -0.0
935,739 - SM_b21186 0.30 -0.9
935,739 - SM_b21186 0.30 +0.1
935,987 + SM_b21186 0.50 +0.2
936,168 - SM_b21186 0.64 +0.4
936,168 - SM_b21186 0.64 +0.1
936,168 - SM_b21186 0.64 +0.5

Or see this region's nucleotide sequence