Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21171 and SM_b21172 overlap by 35 nucleotides SM_b21172 and SM_b21173 are separated by 79 nucleotides SM_b21173 and SM_b21174 overlap by 4 nucleotides
SM_b21171: SM_b21171 - enzyme protein, at 917,431 to 918,570
_b21171
SM_b21172: SM_b21172 - hypothetical protein, at 918,536 to 919,345
_b21172
SM_b21173: SM_b21173 - hypothetical protein, at 919,425 to 919,616
_b21173
SM_b21174: SM_b21174 - phosphate uptake ABC transporter permease, at 919,613 to 921,130
_b21174
Position (kb) 919
920 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 918.428 kb on + strand, within SM_b21171 at 918.429 kb on - strand, within SM_b21171 at 918.760 kb on + strand, within SM_b21172 at 918.761 kb on - strand, within SM_b21172 at 918.795 kb on + strand, within SM_b21172 at 918.796 kb on - strand, within SM_b21172 at 918.802 kb on - strand, within SM_b21172 at 918.996 kb on + strand, within SM_b21172 at 919.157 kb on + strand, within SM_b21172 at 919.157 kb on + strand, within SM_b21172 at 919.272 kb on + strand at 919.501 kb on + strand, within SM_b21173 at 919.502 kb on - strand, within SM_b21173 at 919.517 kb on + strand, within SM_b21173 at 919.699 kb on + strand at 919.699 kb on + strand at 919.702 kb on - strand at 919.752 kb on - strand at 920.331 kb on + strand, within SM_b21174
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 918,428 + SM_b21171 0.87 +1.7 918,429 - SM_b21171 0.88 -4.3 918,760 + SM_b21172 0.28 -0.3 918,761 - SM_b21172 0.28 +0.6 918,795 + SM_b21172 0.32 +0.4 918,796 - SM_b21172 0.32 -3.4 918,802 - SM_b21172 0.33 -3.1 918,996 + SM_b21172 0.57 +0.4 919,157 + SM_b21172 0.77 +1.1 919,157 + SM_b21172 0.77 +1.8 919,272 + -2.1 919,501 + SM_b21173 0.40 -2.1 919,502 - SM_b21173 0.40 +0.1 919,517 + SM_b21173 0.48 -4.1 919,699 + -0.2 919,699 + -0.5 919,702 - +2.4 919,752 - -0.9 920,331 + SM_b21174 0.47 +0.6
Or see this region's nucleotide sequence