Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21155

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21153 and SM_b21154 are separated by 150 nucleotidesSM_b21154 and SM_b21155 are separated by 80 nucleotidesSM_b21155 and SM_b21156 are separated by 1 nucleotidesSM_b21156 and SM_b21157 are separated by 42 nucleotides SM_b21153: SM_b21153 - acetyltransferase, at 898,009 to 898,509 _b21153 SM_b21154: SM_b21154 - hypothetical protein, at 898,660 to 899,043 _b21154 SM_b21155: SM_b21155 - hypothetical protein, at 899,124 to 900,617 _b21155 SM_b21156: SM_b21156 - hypothetical protein, at 900,619 to 901,185 _b21156 SM_b21157: SM_b21157 - translation initiation inhibitor protein, at 901,228 to 901,617 _b21157 Position (kb) 899 900 901Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 898.270 kb on + strand, within SM_b21153at 898.271 kb on - strand, within SM_b21153at 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 899.015 kb on + strandat 899.015 kb on + strandat 899.015 kb on + strandat 899.116 kb on + strandat 899.117 kb on - strandat 899.239 kb on + strandat 899.240 kb on - strandat 899.687 kb on + strand, within SM_b21155at 899.697 kb on - strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.777 kb on - strand, within SM_b21155at 900.006 kb on + strand, within SM_b21155at 900.214 kb on - strand, within SM_b21155at 900.358 kb on + strand, within SM_b21155at 900.358 kb on + strand, within SM_b21155at 900.359 kb on - strand, within SM_b21155at 900.359 kb on - strand, within SM_b21155at 900.537 kb on + strandat 900.537 kb on + strandat 900.538 kb on - strandat 900.546 kb on - strandat 900.695 kb on + strand, within SM_b21156at 900.699 kb on - strand, within SM_b21156at 900.897 kb on - strand, within SM_b21156at 900.995 kb on - strand, within SM_b21156at 901.054 kb on + strand, within SM_b21156at 901.055 kb on - strand, within SM_b21156at 901.430 kb on - strand, within SM_b21157at 901.504 kb on + strand, within SM_b21157at 901.505 kb on - strand, within SM_b21157at 901.513 kb on + strand, within SM_b21157at 901.513 kb on + strand, within SM_b21157at 901.547 kb on + strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.597 kb on + strandat 901.598 kb on - strandat 901.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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898,270 + SM_b21153 0.52 -0.1
898,271 - SM_b21153 0.52 +0.6
898,687 + -0.5
898,687 + -0.8
898,687 + +1.6
898,687 + -0.7
898,687 + -2.2
898,688 - -0.4
898,688 - -0.4
898,688 - +1.5
898,688 - +0.5
898,688 - -0.3
898,688 - +0.1
899,015 + -0.4
899,015 + +0.4
899,015 + +0.3
899,116 + -0.2
899,117 - +0.9
899,239 + -0.5
899,240 - +0.2
899,687 + SM_b21155 0.38 -1.6
899,697 - SM_b21155 0.38 -0.4
899,776 + SM_b21155 0.44 -0.0
899,776 + SM_b21155 0.44 -1.2
899,776 + SM_b21155 0.44 -4.2
899,777 - SM_b21155 0.44 +1.1
900,006 + SM_b21155 0.59 +0.5
900,214 - SM_b21155 0.73 +0.7
900,358 + SM_b21155 0.83 -2.2
900,358 + SM_b21155 0.83 -2.4
900,359 - SM_b21155 0.83 -1.4
900,359 - SM_b21155 0.83 +0.6
900,537 + -1.8
900,537 + +0.4
900,538 - -1.6
900,546 - +0.7
900,695 + SM_b21156 0.13 +0.8
900,699 - SM_b21156 0.14 -0.8
900,897 - SM_b21156 0.49 +0.2
900,995 - SM_b21156 0.66 -0.6
901,054 + SM_b21156 0.77 -0.0
901,055 - SM_b21156 0.77 -2.3
901,430 - SM_b21157 0.52 -2.1
901,504 + SM_b21157 0.71 -3.0
901,505 - SM_b21157 0.71 +0.7
901,513 + SM_b21157 0.73 -2.1
901,513 + SM_b21157 0.73 -0.8
901,547 + SM_b21157 0.82 -1.6
901,548 - SM_b21157 0.82 +0.1
901,548 - SM_b21157 0.82 +0.4
901,548 - SM_b21157 0.82 -1.2
901,597 + +0.6
901,598 - -1.4
901,598 - +1.2

Or see this region's nucleotide sequence