Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21149

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21148 and SM_b21149 are separated by 12 nucleotidesSM_b21149 and SM_b21150 overlap by 4 nucleotidesSM_b21150 and SM_b21151 are separated by 29 nucleotides SM_b21148: SM_b21148 - oxidoreductase, at 892,614 to 893,774 _b21148 SM_b21149: SM_b21149 - sugar uptake ABC transporter permease, at 893,787 to 894,671 _b21149 SM_b21150: SM_b21150 - sugar uptake ABC transporter permease, at 894,668 to 895,525 _b21150 SM_b21151: SM_b21151 - substrate-binding protein of a sugar uptake ABC transporter system, at 895,555 to 896,784 _b21151 Position (kb) 893 894 895Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 892.854 kb on - strand, within SM_b21148at 892.860 kb on - strand, within SM_b21148at 893.004 kb on + strand, within SM_b21148at 893.005 kb on - strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.078 kb on - strand, within SM_b21148at 893.085 kb on + strand, within SM_b21148at 893.085 kb on + strand, within SM_b21148at 893.085 kb on + strand, within SM_b21148at 893.086 kb on - strand, within SM_b21148at 893.121 kb on + strand, within SM_b21148at 893.130 kb on + strand, within SM_b21148at 893.359 kb on - strand, within SM_b21148at 893.380 kb on - strand, within SM_b21148at 893.380 kb on - strand, within SM_b21148at 893.545 kb on - strand, within SM_b21148at 893.575 kb on - strand, within SM_b21148at 893.848 kb on - strandat 893.882 kb on + strand, within SM_b21149at 893.949 kb on + strand, within SM_b21149at 894.159 kb on + strand, within SM_b21149at 894.160 kb on - strand, within SM_b21149at 894.160 kb on - strand, within SM_b21149at 894.160 kb on - strand, within SM_b21149at 894.162 kb on - strand, within SM_b21149at 894.306 kb on + strand, within SM_b21149at 894.307 kb on - strand, within SM_b21149at 894.307 kb on - strand, within SM_b21149at 894.307 kb on - strand, within SM_b21149at 894.345 kb on + strand, within SM_b21149at 894.346 kb on - strand, within SM_b21149at 894.381 kb on + strand, within SM_b21149at 894.382 kb on - strand, within SM_b21149at 894.538 kb on - strand, within SM_b21149at 894.538 kb on - strand, within SM_b21149at 894.599 kb on + strandat 894.627 kb on + strandat 894.627 kb on + strandat 894.704 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.783 kb on + strand, within SM_b21150at 894.783 kb on + strand, within SM_b21150at 894.783 kb on + strand, within SM_b21150at 894.858 kb on - strand, within SM_b21150at 894.858 kb on - strand, within SM_b21150at 894.898 kb on + strand, within SM_b21150at 894.899 kb on - strand, within SM_b21150at 894.968 kb on + strand, within SM_b21150at 894.968 kb on + strand, within SM_b21150at 894.969 kb on - strand, within SM_b21150at 895.104 kb on - strand, within SM_b21150at 895.169 kb on + strand, within SM_b21150at 895.169 kb on + strand, within SM_b21150at 895.170 kb on - strand, within SM_b21150at 895.232 kb on + strand, within SM_b21150at 895.239 kb on + strand, within SM_b21150at 895.240 kb on - strand, within SM_b21150at 895.281 kb on + strand, within SM_b21150at 895.281 kb on + strand, within SM_b21150at 895.310 kb on + strandat 895.311 kb on - strand, within SM_b21150at 895.358 kb on + strand, within SM_b21150at 895.358 kb on + strand, within SM_b21150at 895.359 kb on - strand, within SM_b21150at 895.389 kb on - strand, within SM_b21150at 895.485 kb on - strandat 895.524 kb on - strandat 895.534 kb on + strandat 895.560 kb on + strandat 895.561 kb on - strandat 895.561 kb on - strandat 895.561 kb on - strandat 895.576 kb on - strandat 895.660 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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892,854 - SM_b21148 0.21 +0.6
892,860 - SM_b21148 0.21 +1.6
893,004 + SM_b21148 0.34 -3.1
893,005 - SM_b21148 0.34 +0.2
893,077 + SM_b21148 0.40 -0.2
893,077 + SM_b21148 0.40 +1.5
893,077 + SM_b21148 0.40 -1.4
893,077 + SM_b21148 0.40 -0.1
893,077 + SM_b21148 0.40 -1.0
893,077 + SM_b21148 0.40 +2.4
893,078 - SM_b21148 0.40 -2.2
893,085 + SM_b21148 0.41 -1.0
893,085 + SM_b21148 0.41 -0.9
893,085 + SM_b21148 0.41 +0.3
893,086 - SM_b21148 0.41 -0.1
893,121 + SM_b21148 0.44 -1.2
893,130 + SM_b21148 0.44 +1.3
893,359 - SM_b21148 0.64 +0.5
893,380 - SM_b21148 0.66 -1.1
893,380 - SM_b21148 0.66 -1.0
893,545 - SM_b21148 0.80 -1.7
893,575 - SM_b21148 0.83 +0.8
893,848 - +4.3
893,882 + SM_b21149 0.11 +0.7
893,949 + SM_b21149 0.18 -0.8
894,159 + SM_b21149 0.42 +0.3
894,160 - SM_b21149 0.42 -2.5
894,160 - SM_b21149 0.42 -2.2
894,160 - SM_b21149 0.42 +1.4
894,162 - SM_b21149 0.42 -3.6
894,306 + SM_b21149 0.59 +0.9
894,307 - SM_b21149 0.59 -4.1
894,307 - SM_b21149 0.59 +0.9
894,307 - SM_b21149 0.59 +1.3
894,345 + SM_b21149 0.63 -1.7
894,346 - SM_b21149 0.63 +1.1
894,381 + SM_b21149 0.67 +1.8
894,382 - SM_b21149 0.67 +0.7
894,538 - SM_b21149 0.85 -3.4
894,538 - SM_b21149 0.85 -3.7
894,599 + -2.5
894,627 + +2.7
894,627 + -0.7
894,704 + -0.3
894,722 + -0.6
894,722 + -0.5
894,722 + +0.6
894,722 + -0.3
894,722 + -2.0
894,783 + SM_b21150 0.13 -0.5
894,783 + SM_b21150 0.13 -0.5
894,783 + SM_b21150 0.13 -0.7
894,858 - SM_b21150 0.22 +0.7
894,858 - SM_b21150 0.22 +0.2
894,898 + SM_b21150 0.27 +1.5
894,899 - SM_b21150 0.27 +0.6
894,968 + SM_b21150 0.35 +1.6
894,968 + SM_b21150 0.35 -0.5
894,969 - SM_b21150 0.35 +1.8
895,104 - SM_b21150 0.51 +1.1
895,169 + SM_b21150 0.58 +2.5
895,169 + SM_b21150 0.58 +0.3
895,170 - SM_b21150 0.59 +0.6
895,232 + SM_b21150 0.66 +1.4
895,239 + SM_b21150 0.67 -0.4
895,240 - SM_b21150 0.67 -3.1
895,281 + SM_b21150 0.71 +0.1
895,281 + SM_b21150 0.71 -0.2
895,310 + +0.1
895,311 - SM_b21150 0.75 +1.4
895,358 + SM_b21150 0.80 +0.7
895,358 + SM_b21150 0.80 +0.7
895,359 - SM_b21150 0.81 -1.3
895,389 - SM_b21150 0.84 -2.8
895,485 - +1.2
895,524 - +0.5
895,534 + +1.3
895,560 + +0.8
895,561 - +0.4
895,561 - -2.4
895,561 - +0.3
895,576 - -3.5
895,660 + -0.2

Or see this region's nucleotide sequence