Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21135 and SM_b21136 are separated by 39 nucleotides SM_b21136 and SM_b21137 are separated by 5 nucleotides SM_b21137 and SM_b21138 are separated by 13 nucleotides
SM_b21135: SM_b21135 - amino acid ABC transporter substrate-binding protein, at 774,396 to 775,238
_b21135
SM_b21136: SM_b21136 - amino acid ABC transporter permease, at 775,278 to 775,964
_b21136
SM_b21137: SM_b21137 - amino acid ABC transporter permease, at 775,970 to 776,629
_b21137
SM_b21138: SM_b21138 - amino acid ABC transporter ATP-binding protein, at 776,643 to 777,410
_b21138
Position (kb) 775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 774.280 kb on - strand at 774.300 kb on + strand at 774.301 kb on - strand at 774.762 kb on + strand, within SM_b21135 at 774.763 kb on - strand, within SM_b21135 at 774.766 kb on - strand, within SM_b21135 at 774.807 kb on + strand, within SM_b21135 at 774.807 kb on + strand, within SM_b21135 at 774.817 kb on - strand, within SM_b21135 at 774.873 kb on + strand, within SM_b21135 at 774.873 kb on + strand, within SM_b21135 at 774.924 kb on + strand, within SM_b21135 at 774.924 kb on + strand, within SM_b21135 at 774.945 kb on + strand, within SM_b21135 at 774.983 kb on + strand, within SM_b21135 at 775.009 kb on - strand, within SM_b21135 at 775.009 kb on - strand, within SM_b21135 at 775.033 kb on - strand, within SM_b21135 at 775.034 kb on + strand, within SM_b21135 at 775.034 kb on + strand, within SM_b21135 at 775.048 kb on - strand, within SM_b21135 at 775.068 kb on + strand, within SM_b21135 at 775.068 kb on + strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.161 kb on + strand at 775.161 kb on + strand at 775.162 kb on - strand at 775.230 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.480 kb on - strand, within SM_b21136 at 775.531 kb on - strand, within SM_b21136 at 775.600 kb on - strand, within SM_b21136 at 775.611 kb on + strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.689 kb on - strand, within SM_b21136 at 775.703 kb on - strand, within SM_b21136 at 775.760 kb on + strand, within SM_b21136 at 775.785 kb on - strand, within SM_b21136 at 775.894 kb on - strand, within SM_b21136 at 776.195 kb on + strand, within SM_b21137 at 776.195 kb on + strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.219 kb on - strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.376 kb on - strand, within SM_b21137 at 776.376 kb on - strand, within SM_b21137 at 776.559 kb on - strand, within SM_b21137 at 776.574 kb on - strand at 776.954 kb on + strand, within SM_b21138
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 774,280 - +1.5 774,300 + -0.0 774,301 - +0.3 774,762 + SM_b21135 0.43 +1.2 774,763 - SM_b21135 0.44 -0.3 774,766 - SM_b21135 0.44 +0.1 774,807 + SM_b21135 0.49 +0.1 774,807 + SM_b21135 0.49 +1.4 774,817 - SM_b21135 0.50 -1.3 774,873 + SM_b21135 0.57 +0.4 774,873 + SM_b21135 0.57 +0.2 774,924 + SM_b21135 0.63 -1.3 774,924 + SM_b21135 0.63 -2.1 774,945 + SM_b21135 0.65 +0.3 774,983 + SM_b21135 0.70 -0.1 775,009 - SM_b21135 0.73 -3.3 775,009 - SM_b21135 0.73 +0.5 775,033 - SM_b21135 0.76 -1.0 775,034 + SM_b21135 0.76 -0.4 775,034 + SM_b21135 0.76 -2.9 775,048 - SM_b21135 0.77 -3.5 775,068 + SM_b21135 0.80 +0.4 775,068 + SM_b21135 0.80 -0.4 775,069 - SM_b21135 0.80 +1.0 775,069 - SM_b21135 0.80 -0.7 775,069 - SM_b21135 0.80 +0.0 775,161 + -0.1 775,161 + -2.3 775,162 - -0.8 775,230 + -0.6 775,308 + +2.0 775,308 + -2.9 775,308 + +1.6 775,308 + -1.8 775,308 + -0.5 775,308 + +0.9 775,309 - -0.1 775,309 - -0.3 775,309 - -3.9 775,309 - -1.1 775,309 - -0.5 775,309 - -0.0 775,309 - -0.4 775,309 - -0.0 775,480 - SM_b21136 0.29 -1.0 775,531 - SM_b21136 0.37 +0.5 775,600 - SM_b21136 0.47 -1.7 775,611 + SM_b21136 0.48 -1.5 775,612 - SM_b21136 0.49 -0.7 775,612 - SM_b21136 0.49 +1.2 775,612 - SM_b21136 0.49 +0.9 775,689 - SM_b21136 0.60 +1.7 775,703 - SM_b21136 0.62 +1.4 775,760 + SM_b21136 0.70 +0.6 775,785 - SM_b21136 0.74 -0.5 775,894 - SM_b21136 0.90 +0.9 776,195 + SM_b21137 0.34 +0.2 776,195 + SM_b21137 0.34 -1.3 776,196 - SM_b21137 0.34 -0.4 776,196 - SM_b21137 0.34 +1.0 776,196 - SM_b21137 0.34 +0.9 776,198 + SM_b21137 0.35 +0.7 776,198 + SM_b21137 0.35 -2.3 776,199 - SM_b21137 0.35 -3.2 776,199 - SM_b21137 0.35 -0.6 776,199 - SM_b21137 0.35 +0.2 776,219 - SM_b21137 0.38 -0.7 776,375 + SM_b21137 0.61 +0.9 776,375 + SM_b21137 0.61 +0.6 776,375 + SM_b21137 0.61 -2.4 776,375 + SM_b21137 0.61 +1.0 776,375 + SM_b21137 0.61 -1.3 776,376 - SM_b21137 0.62 -4.0 776,376 - SM_b21137 0.62 -0.3 776,559 - SM_b21137 0.89 +3.4 776,574 - -0.8 776,954 + SM_b21138 0.40 +0.8
Or see this region's nucleotide sequence