Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21107

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21106 and SM_b21107 are separated by 1 nucleotidesSM_b21107 and SM_b21108 are separated by 12 nucleotidesSM_b21108 and SM_b21109 overlap by 8 nucleotides SM_b21106: SM_b21106 - ABC transporter for L-Fucose, ATPase component (from data), at 748,131 to 749,228 _b21106 SM_b21107: SM_b21107 - dehydratase involved in L-fucose catabolism (from data), at 749,230 to 750,342 _b21107 SM_b21108: SM_b21108 - L-fucose mutarotase (EC 5.1.3.29) (from data), at 750,355 to 750,684 _b21108 SM_b21109: SM_b21109 - L-fucose dehydrogenase (EC 1.1.1.122) (from data), at 750,677 to 751,759 _b21109 Position (kb) 749 750 751Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 748.380 kb on + strand, within SM_b21106at 748.380 kb on + strand, within SM_b21106at 748.380 kb on + strand, within SM_b21106at 748.380 kb on + strand, within SM_b21106at 748.380 kb on + strand, within SM_b21106at 748.381 kb on - strand, within SM_b21106at 748.381 kb on - strand, within SM_b21106at 748.381 kb on - strand, within SM_b21106at 748.381 kb on - strand, within SM_b21106at 748.397 kb on + strand, within SM_b21106at 748.397 kb on + strand, within SM_b21106at 748.398 kb on - strand, within SM_b21106at 748.398 kb on - strand, within SM_b21106at 748.415 kb on + strand, within SM_b21106at 748.613 kb on - strand, within SM_b21106at 748.613 kb on - strand, within SM_b21106at 748.695 kb on + strand, within SM_b21106at 748.695 kb on + strand, within SM_b21106at 748.695 kb on + strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.983 kb on + strand, within SM_b21106at 748.983 kb on + strand, within SM_b21106at 748.984 kb on - strand, within SM_b21106at 748.984 kb on - strand, within SM_b21106at 749.235 kb on + strandat 749.372 kb on - strand, within SM_b21107at 749.636 kb on - strand, within SM_b21107at 749.636 kb on - strand, within SM_b21107at 749.761 kb on + strand, within SM_b21107at 749.761 kb on + strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.983 kb on + strand, within SM_b21107at 750.007 kb on + strand, within SM_b21107at 750.008 kb on - strandat 750.008 kb on - strand, within SM_b21107at 750.008 kb on - strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.010 kb on - strand, within SM_b21107at 750.178 kb on + strand, within SM_b21107at 750.179 kb on - strand, within SM_b21107at 750.188 kb on - strand, within SM_b21107at 750.297 kb on - strandat 750.406 kb on + strand, within SM_b21108at 750.406 kb on + strand, within SM_b21108at 750.406 kb on + strand, within SM_b21108at 750.407 kb on - strand, within SM_b21108at 750.476 kb on - strand, within SM_b21108at 750.526 kb on + strand, within SM_b21108at 750.527 kb on - strand, within SM_b21108at 750.527 kb on - strand, within SM_b21108at 750.794 kb on + strand, within SM_b21109at 750.794 kb on + strand, within SM_b21109at 750.795 kb on - strand, within SM_b21109at 750.796 kb on + strand, within SM_b21109at 750.797 kb on - strand, within SM_b21109at 751.000 kb on - strand, within SM_b21109at 751.142 kb on + strand, within SM_b21109at 751.143 kb on - strand, within SM_b21109at 751.143 kb on - strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.257 kb on - strand, within SM_b21109

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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748,380 + SM_b21106 0.23 -3.0
748,380 + SM_b21106 0.23 +0.5
748,380 + SM_b21106 0.23 -1.4
748,380 + SM_b21106 0.23 +0.8
748,380 + SM_b21106 0.23 -2.7
748,381 - SM_b21106 0.23 -0.2
748,381 - SM_b21106 0.23 -0.9
748,381 - SM_b21106 0.23 -5.4
748,381 - SM_b21106 0.23 -1.4
748,397 + SM_b21106 0.24 -2.0
748,397 + SM_b21106 0.24 -0.1
748,398 - SM_b21106 0.24 -2.8
748,398 - SM_b21106 0.24 -2.8
748,415 + SM_b21106 0.26 +0.5
748,613 - SM_b21106 0.44 -1.0
748,613 - SM_b21106 0.44 -2.8
748,695 + SM_b21106 0.51 -0.4
748,695 + SM_b21106 0.51 -4.9
748,695 + SM_b21106 0.51 +0.0
748,696 - SM_b21106 0.51 -4.2
748,696 - SM_b21106 0.51 +0.0
748,696 - SM_b21106 0.51 -3.2
748,696 - SM_b21106 0.51 -2.3
748,696 - SM_b21106 0.51 +0.1
748,696 - SM_b21106 0.51 +0.6
748,983 + SM_b21106 0.78 +0.5
748,983 + SM_b21106 0.78 +1.5
748,984 - SM_b21106 0.78 -0.3
748,984 - SM_b21106 0.78 +0.6
749,235 + +0.5
749,372 - SM_b21107 0.13 -0.1
749,636 - SM_b21107 0.36 +2.2
749,636 - SM_b21107 0.36 -0.6
749,761 + SM_b21107 0.48 +0.5
749,761 + SM_b21107 0.48 -0.4
749,762 - SM_b21107 0.48 +0.5
749,762 - SM_b21107 0.48 +0.7
749,762 - SM_b21107 0.48 +2.1
749,762 - SM_b21107 0.48 -0.2
749,983 + SM_b21107 0.68 +0.7
750,007 + SM_b21107 0.70 +1.0
750,008 - -0.5
750,008 - SM_b21107 0.70 +1.4
750,008 - SM_b21107 0.70 +0.3
750,009 + SM_b21107 0.70 -1.6
750,009 + SM_b21107 0.70 -1.1
750,010 - SM_b21107 0.70 +1.4
750,178 + SM_b21107 0.85 +0.5
750,179 - SM_b21107 0.85 -1.7
750,188 - SM_b21107 0.86 +0.7
750,297 - +0.2
750,406 + SM_b21108 0.15 -0.4
750,406 + SM_b21108 0.15 -1.3
750,406 + SM_b21108 0.15 -0.1
750,407 - SM_b21108 0.16 -3.3
750,476 - SM_b21108 0.37 -0.2
750,526 + SM_b21108 0.52 +0.1
750,527 - SM_b21108 0.52 +0.9
750,527 - SM_b21108 0.52 +1.1
750,794 + SM_b21109 0.11 -1.3
750,794 + SM_b21109 0.11 +0.4
750,795 - SM_b21109 0.11 -0.4
750,796 + SM_b21109 0.11 -0.3
750,797 - SM_b21109 0.11 -1.3
751,000 - SM_b21109 0.30 -0.1
751,142 + SM_b21109 0.43 -0.2
751,143 - SM_b21109 0.43 -0.8
751,143 - SM_b21109 0.43 -0.5
751,256 + SM_b21109 0.53 -2.5
751,256 + SM_b21109 0.53 -0.9
751,256 + SM_b21109 0.53 +0.8
751,257 - SM_b21109 0.54 -0.4

Or see this region's nucleotide sequence