Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21104

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21103 and SM_b21104 are separated by 69 nucleotidesSM_b21104 and SM_b21105 overlap by 1 nucleotidesSM_b21105 and SM_b21106 are separated by 6 nucleotides SM_b21103: SM_b21103 - ABC transporter for L-Fucose, periplasmic substrate-binding protein (from data), at 744,973 to 746,292 _b21103 SM_b21104: SM_b21104 - ABC transporter for L-Fucose, permease component 1 (from data), at 746,362 to 747,258 _b21104 SM_b21105: SM_b21105 - ABC transporter for L-Fucose, permease component 2 (from data), at 747,258 to 748,124 _b21105 SM_b21106: SM_b21106 - ABC transporter for L-Fucose, ATPase component (from data), at 748,131 to 749,228 _b21106 Position (kb) 746 747 748Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 745.439 kb on - strand, within SM_b21103at 745.477 kb on + strand, within SM_b21103at 745.478 kb on - strand, within SM_b21103at 745.478 kb on - strand, within SM_b21103at 745.478 kb on - strand, within SM_b21103at 745.606 kb on + strand, within SM_b21103at 745.636 kb on + strand, within SM_b21103at 745.637 kb on - strand, within SM_b21103at 745.637 kb on - strand, within SM_b21103at 745.637 kb on - strand, within SM_b21103at 745.711 kb on + strand, within SM_b21103at 745.711 kb on + strand, within SM_b21103at 745.712 kb on - strand, within SM_b21103at 745.712 kb on - strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.748 kb on - strand, within SM_b21103at 746.458 kb on + strand, within SM_b21104at 746.459 kb on - strand, within SM_b21104at 746.527 kb on + strand, within SM_b21104at 746.527 kb on + strand, within SM_b21104at 746.528 kb on - strand, within SM_b21104at 746.528 kb on - strand, within SM_b21104at 746.657 kb on - strand, within SM_b21104at 746.657 kb on - strand, within SM_b21104at 746.989 kb on + strand, within SM_b21104at 746.989 kb on + strand, within SM_b21104at 746.990 kb on - strand, within SM_b21104at 746.990 kb on - strand, within SM_b21104at 746.990 kb on - strand, within SM_b21104at 747.049 kb on + strand, within SM_b21104at 747.049 kb on + strand, within SM_b21104at 747.050 kb on - strand, within SM_b21104at 747.130 kb on + strand, within SM_b21104at 747.131 kb on - strand, within SM_b21104at 747.170 kb on - strandat 747.170 kb on - strandat 747.205 kb on + strandat 747.256 kb on + strandat 747.256 kb on + strandat 747.263 kb on + strandat 747.263 kb on + strandat 747.521 kb on - strand, within SM_b21105at 747.678 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.727 kb on - strand, within SM_b21105at 747.727 kb on - strand, within SM_b21105at 747.922 kb on - strand, within SM_b21105at 747.942 kb on - strand, within SM_b21105at 747.987 kb on + strand, within SM_b21105at 748.142 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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745,439 - SM_b21103 0.35 +0.4
745,477 + SM_b21103 0.38 -0.3
745,478 - SM_b21103 0.38 +0.3
745,478 - SM_b21103 0.38 -1.2
745,478 - SM_b21103 0.38 +1.4
745,606 + SM_b21103 0.48 -1.4
745,636 + SM_b21103 0.50 -0.1
745,637 - SM_b21103 0.50 +0.8
745,637 - SM_b21103 0.50 +0.5
745,637 - SM_b21103 0.50 -1.5
745,711 + SM_b21103 0.56 -2.5
745,711 + SM_b21103 0.56 -2.5
745,712 - SM_b21103 0.56 +0.8
745,712 - SM_b21103 0.56 -0.3
745,747 + SM_b21103 0.59 -0.9
745,747 + SM_b21103 0.59 -0.3
745,747 + SM_b21103 0.59 -0.1
745,747 + SM_b21103 0.59 +0.1
745,748 - SM_b21103 0.59 -0.8
746,458 + SM_b21104 0.11 +0.5
746,459 - SM_b21104 0.11 -0.1
746,527 + SM_b21104 0.18 +0.6
746,527 + SM_b21104 0.18 -1.5
746,528 - SM_b21104 0.19 +1.1
746,528 - SM_b21104 0.19 -1.9
746,657 - SM_b21104 0.33 +0.3
746,657 - SM_b21104 0.33 -0.2
746,989 + SM_b21104 0.70 -1.0
746,989 + SM_b21104 0.70 +1.1
746,990 - SM_b21104 0.70 +1.0
746,990 - SM_b21104 0.70 +1.6
746,990 - SM_b21104 0.70 +0.8
747,049 + SM_b21104 0.77 +1.8
747,049 + SM_b21104 0.77 -1.3
747,050 - SM_b21104 0.77 -5.0
747,130 + SM_b21104 0.86 +3.0
747,131 - SM_b21104 0.86 -0.1
747,170 - -1.0
747,170 - +2.6
747,205 + -1.0
747,256 + +2.2
747,256 + +0.1
747,263 + +1.0
747,263 + +1.3
747,521 - SM_b21105 0.30 -0.2
747,678 + SM_b21105 0.48 -0.1
747,726 + SM_b21105 0.54 -0.2
747,726 + SM_b21105 0.54 +1.0
747,726 + SM_b21105 0.54 -0.8
747,726 + SM_b21105 0.54 -0.3
747,726 + SM_b21105 0.54 -1.1
747,727 - SM_b21105 0.54 -1.7
747,727 - SM_b21105 0.54 +2.7
747,922 - SM_b21105 0.77 -2.3
747,942 - SM_b21105 0.79 -0.2
747,987 + SM_b21105 0.84 +0.2
748,142 + +3.2

Or see this region's nucleotide sequence