Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21094 and SM_b21095 overlap by 4 nucleotides SM_b21095 and SM_b21096 are separated by 8 nucleotides SM_b21096 and SM_b21097 are separated by 49 nucleotides SM_b21097 and SM_b21098 are separated by 82 nucleotides
SM_b21094: SM_b21094 - argininosuccinate lyase, at 736,510 to 737,976
_b21094
SM_b21095: SM_b21095 - amino acid ABC transporter permease, at 737,973 to 738,845
_b21095
SM_b21096: SM_b21096 - amino acid transporter ABC transporter ATP-binding protein, at 738,854 to 739,624
_b21096
SM_b21097: SM_b21097 - amino acid ABC transporter substrate-binding protein, at 739,674 to 740,516
_b21097
SM_b21098: SM_b21098 - hypothetical protein, at 740,599 to 741,396
_b21098
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 738.015 kb on + strand at 738.053 kb on + strand at 738.141 kb on + strand, within SM_b21095 at 738.141 kb on + strand, within SM_b21095 at 738.142 kb on - strand, within SM_b21095 at 738.142 kb on - strand, within SM_b21095 at 738.186 kb on + strand, within SM_b21095 at 738.187 kb on - strand, within SM_b21095 at 738.187 kb on - strand, within SM_b21095 at 738.300 kb on + strand, within SM_b21095 at 738.301 kb on - strand, within SM_b21095 at 738.302 kb on + strand, within SM_b21095 at 738.302 kb on + strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand at 738.473 kb on + strand, within SM_b21095 at 738.473 kb on + strand, within SM_b21095 at 738.473 kb on + strand, within SM_b21095 at 738.474 kb on - strand, within SM_b21095 at 738.522 kb on + strand, within SM_b21095 at 738.679 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.703 kb on - strand, within SM_b21095 at 738.703 kb on - strand, within SM_b21095 at 738.792 kb on + strand at 738.793 kb on - strand at 738.793 kb on - strand at 738.793 kb on - strand at 738.794 kb on + strand at 738.865 kb on + strand at 738.866 kb on - strand at 738.866 kb on - strand at 738.899 kb on + strand at 738.900 kb on - strand at 739.511 kb on - strand, within SM_b21096 at 739.807 kb on - strand, within SM_b21097 at 739.821 kb on + strand, within SM_b21097 at 739.822 kb on - strand, within SM_b21097 at 739.967 kb on + strand, within SM_b21097 at 739.973 kb on + strand, within SM_b21097 at 740.006 kb on + strand, within SM_b21097 at 740.025 kb on + strand, within SM_b21097 at 740.025 kb on + strand, within SM_b21097 at 740.050 kb on - strand, within SM_b21097 at 740.050 kb on - strand, within SM_b21097 at 740.107 kb on + strand, within SM_b21097 at 740.316 kb on + strand, within SM_b21097 at 740.317 kb on - strand, within SM_b21097 at 740.317 kb on - strand, within SM_b21097 at 740.350 kb on - strand, within SM_b21097 at 740.350 kb on - strand, within SM_b21097 at 740.350 kb on - strand, within SM_b21097 at 740.436 kb on + strand at 740.457 kb on + strand at 740.457 kb on + strand at 740.457 kb on + strand at 740.457 kb on + strand at 740.458 kb on - strand at 740.458 kb on - strand at 740.490 kb on + strand at 740.490 kb on + strand at 740.491 kb on - strand at 740.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 738,015 + -1.6 738,053 + -0.9 738,141 + SM_b21095 0.19 -0.9 738,141 + SM_b21095 0.19 +1.0 738,142 - SM_b21095 0.19 -1.6 738,142 - SM_b21095 0.19 -1.9 738,186 + SM_b21095 0.24 +0.2 738,187 - SM_b21095 0.25 -0.3 738,187 - SM_b21095 0.25 -1.9 738,300 + SM_b21095 0.37 -0.4 738,301 - SM_b21095 0.38 -1.4 738,302 + SM_b21095 0.38 -2.1 738,302 + SM_b21095 0.38 -1.9 738,303 - SM_b21095 0.38 +0.0 738,303 - SM_b21095 0.38 -0.3 738,303 - SM_b21095 0.38 -2.8 738,303 - SM_b21095 0.38 -0.1 738,303 - SM_b21095 0.38 -3.0 738,303 - -0.5 738,473 + SM_b21095 0.57 +0.4 738,473 + SM_b21095 0.57 +0.0 738,473 + SM_b21095 0.57 -2.8 738,474 - SM_b21095 0.57 +1.4 738,522 + SM_b21095 0.63 +0.3 738,679 + SM_b21095 0.81 -1.3 738,702 + SM_b21095 0.84 +3.1 738,702 + SM_b21095 0.84 -0.5 738,702 + SM_b21095 0.84 -1.1 738,702 + SM_b21095 0.84 +0.6 738,703 - SM_b21095 0.84 +2.4 738,703 - SM_b21095 0.84 +0.4 738,792 + -0.3 738,793 - -0.5 738,793 - -0.3 738,793 - -0.3 738,794 + -0.7 738,865 + -1.0 738,866 - +0.8 738,866 - -0.0 738,899 + +0.6 738,900 - +0.4 739,511 - SM_b21096 0.85 -2.6 739,807 - SM_b21097 0.16 +0.1 739,821 + SM_b21097 0.17 +0.7 739,822 - SM_b21097 0.18 +0.2 739,967 + SM_b21097 0.35 -1.6 739,973 + SM_b21097 0.35 -3.1 740,006 + SM_b21097 0.39 -3.6 740,025 + SM_b21097 0.42 -3.1 740,025 + SM_b21097 0.42 -1.7 740,050 - SM_b21097 0.45 +0.5 740,050 - SM_b21097 0.45 +0.4 740,107 + SM_b21097 0.51 -0.4 740,316 + SM_b21097 0.76 +0.2 740,317 - SM_b21097 0.76 +0.4 740,317 - SM_b21097 0.76 +0.1 740,350 - SM_b21097 0.80 +0.6 740,350 - SM_b21097 0.80 +0.2 740,350 - SM_b21097 0.80 +0.9 740,436 + -0.4 740,457 + -1.3 740,457 + -0.7 740,457 + -1.3 740,457 + +0.3 740,458 - -0.5 740,458 - +0.0 740,490 + +0.7 740,490 + +1.8 740,491 - -0.6 740,515 - -2.9
Or see this region's nucleotide sequence