Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21087 and SM_b21088 are separated by 323 nucleotides SM_b21088 and SM_b21089 are separated by 162 nucleotides
SM_b21087: SM_b21087 - conjugal transfer protein, at 725,979 to 730,598
_b21087
SM_b21088: SM_b21088 - hypothetical protein, at 730,922 to 731,137
_b21088
SM_b21089: SM_b21089 - membrane-anchored racemase, at 731,300 to 732,370
_b21089
Position (kb) 730
731
732 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 730.571 kb on + strand at 730.589 kb on + strand at 730.590 kb on - strand at 730.590 kb on - strand at 730.596 kb on + strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.677 kb on - strand at 730.784 kb on + strand at 730.784 kb on + strand at 730.785 kb on - strand at 730.912 kb on + strand at 730.912 kb on + strand at 730.913 kb on - strand at 730.938 kb on - strand at 730.998 kb on + strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.106 kb on + strand, within SM_b21088 at 731.141 kb on + strand at 731.141 kb on + strand at 731.142 kb on - strand at 731.142 kb on - strand at 731.155 kb on - strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.292 kb on - strand at 731.295 kb on + strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.372 kb on + strand at 731.373 kb on - strand at 731.532 kb on + strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089 at 731.631 kb on + strand, within SM_b21089 at 731.632 kb on - strand, within SM_b21089 at 731.642 kb on + strand, within SM_b21089 at 731.678 kb on + strand, within SM_b21089 at 731.679 kb on - strand, within SM_b21089 at 731.679 kb on - strand, within SM_b21089 at 731.679 kb on - strand, within SM_b21089 at 731.696 kb on + strand, within SM_b21089 at 731.884 kb on - strand, within SM_b21089 at 731.949 kb on + strand, within SM_b21089 at 731.949 kb on + strand, within SM_b21089 at 731.950 kb on - strand, within SM_b21089 at 731.950 kb on - strand, within SM_b21089 at 732.018 kb on - strand, within SM_b21089 at 732.033 kb on - strand, within SM_b21089 at 732.041 kb on + strand, within SM_b21089 at 732.042 kb on - strand, within SM_b21089 at 732.042 kb on - strand, within SM_b21089 at 732.129 kb on - strand, within SM_b21089
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 730,571 + -1.0 730,589 + -0.5 730,590 - -2.6 730,590 - +1.9 730,596 + -1.9 730,597 - -2.0 730,597 - -0.2 730,597 - +0.5 730,677 - -3.3 730,784 + +1.2 730,784 + -1.9 730,785 - -4.4 730,912 + -1.9 730,912 + -3.8 730,913 - -0.5 730,938 - +1.0 730,998 + SM_b21088 0.35 +0.0 730,999 - SM_b21088 0.36 +1.1 730,999 - SM_b21088 0.36 -0.7 730,999 - SM_b21088 0.36 -0.2 730,999 - SM_b21088 0.36 -1.9 731,015 + SM_b21088 0.43 +1.3 731,015 + SM_b21088 0.43 +0.7 731,015 + SM_b21088 0.43 +0.5 731,106 + SM_b21088 0.85 -0.5 731,141 + +1.0 731,141 + +0.3 731,142 - +0.4 731,142 - +0.0 731,155 - -1.3 731,291 + -0.6 731,291 + -0.3 731,291 + -0.4 731,292 - +0.3 731,295 + +0.3 731,296 - -0.7 731,296 - +1.5 731,296 - -0.5 731,296 - +0.9 731,372 + +0.7 731,373 - -3.5 731,532 + SM_b21089 0.22 +0.0 731,594 - SM_b21089 0.27 +0.6 731,594 - SM_b21089 0.27 -0.1 731,631 + SM_b21089 0.31 +0.8 731,632 - SM_b21089 0.31 -1.5 731,642 + SM_b21089 0.32 -2.2 731,678 + SM_b21089 0.35 -0.0 731,679 - SM_b21089 0.35 -0.7 731,679 - SM_b21089 0.35 +0.2 731,679 - SM_b21089 0.35 -0.9 731,696 + SM_b21089 0.37 -2.1 731,884 - SM_b21089 0.55 +1.1 731,949 + SM_b21089 0.61 -1.5 731,949 + SM_b21089 0.61 -0.1 731,950 - SM_b21089 0.61 -0.0 731,950 - SM_b21089 0.61 +0.2 732,018 - SM_b21089 0.67 -1.3 732,033 - SM_b21089 0.68 +1.1 732,041 + SM_b21089 0.69 -0.2 732,042 - SM_b21089 0.69 +0.4 732,042 - SM_b21089 0.69 +0.4 732,129 - SM_b21089 0.77 -0.4
Or see this region's nucleotide sequence