Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21078 and SM_b21079 are separated by 428 nucleotides SM_b21079 and SM_b21080 are separated by 300 nucleotides
SM_b21078: SM_b21078 - glycosyltransferase, at 714,876 to 716,084
_b21078
SM_b21079: SM_b21079 - transcriptional regulator, at 716,513 to 717,244
_b21079
SM_b21080: SM_b21080 - response regulator protein, at 717,545 to 718,369
_b21080
Position (kb) 716
717
718 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 715.599 kb on + strand, within SM_b21078 at 715.599 kb on + strand, within SM_b21078 at 715.665 kb on - strand, within SM_b21078 at 715.912 kb on - strand, within SM_b21078 at 715.965 kb on - strand at 715.978 kb on + strand at 715.978 kb on + strand at 715.979 kb on - strand at 715.979 kb on - strand at 715.979 kb on - strand at 715.979 kb on - strand at 716.049 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.078 kb on - strand at 716.078 kb on - strand at 716.082 kb on + strand at 716.236 kb on - strand at 716.336 kb on + strand at 716.337 kb on - strand at 716.337 kb on - strand at 716.337 kb on - strand at 716.337 kb on - strand at 716.438 kb on - strand at 716.477 kb on + strand at 716.478 kb on - strand at 716.480 kb on + strand at 716.481 kb on - strand at 716.582 kb on - strand at 716.587 kb on + strand, within SM_b21079 at 716.588 kb on - strand, within SM_b21079 at 716.588 kb on - strand, within SM_b21079 at 716.588 kb on - strand, within SM_b21079 at 716.588 kb on - strand, within SM_b21079 at 716.627 kb on + strand, within SM_b21079 at 716.648 kb on - strand, within SM_b21079 at 716.769 kb on + strand, within SM_b21079 at 716.769 kb on + strand, within SM_b21079 at 716.769 kb on + strand, within SM_b21079 at 716.832 kb on + strand, within SM_b21079 at 716.832 kb on + strand, within SM_b21079 at 717.012 kb on + strand, within SM_b21079 at 717.013 kb on - strand, within SM_b21079 at 717.013 kb on - strand, within SM_b21079 at 717.065 kb on + strand, within SM_b21079 at 717.065 kb on + strand, within SM_b21079 at 717.066 kb on - strand, within SM_b21079 at 717.140 kb on + strand at 717.369 kb on - strand at 717.369 kb on - strand at 717.543 kb on + strand at 717.562 kb on + strand at 717.613 kb on + strand at 717.614 kb on - strand at 717.643 kb on + strand at 717.643 kb on + strand, within SM_b21080 at 717.643 kb on + strand, within SM_b21080 at 717.646 kb on + strand, within SM_b21080 at 717.646 kb on + strand, within SM_b21080 at 717.658 kb on + strand, within SM_b21080 at 717.658 kb on + strand, within SM_b21080 at 717.659 kb on - strand, within SM_b21080 at 717.748 kb on + strand, within SM_b21080 at 717.765 kb on + strand, within SM_b21080 at 717.766 kb on - strand, within SM_b21080 at 717.986 kb on + strand, within SM_b21080 at 717.986 kb on + strand, within SM_b21080 at 717.986 kb on + strand, within SM_b21080 at 717.987 kb on - strand, within SM_b21080 at 717.987 kb on - strand, within SM_b21080 at 717.987 kb on - strand, within SM_b21080 at 717.987 kb on - strand, within SM_b21080 at 717.988 kb on + strand, within SM_b21080 at 717.988 kb on + strand, within SM_b21080 at 717.988 kb on + strand, within SM_b21080 at 717.989 kb on - strand, within SM_b21080 at 718.053 kb on + strand, within SM_b21080 at 718.053 kb on + strand, within SM_b21080 at 718.123 kb on + strand, within SM_b21080 at 718.124 kb on - strand, within SM_b21080 at 718.203 kb on - strand, within SM_b21080 at 718.231 kb on - strand, within SM_b21080
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 715,599 + SM_b21078 0.60 +0.4 715,599 + SM_b21078 0.60 +0.8 715,665 - SM_b21078 0.65 -0.1 715,912 - SM_b21078 0.86 -0.1 715,965 - +3.2 715,978 + +1.1 715,978 + -4.0 715,979 - -0.4 715,979 - -0.8 715,979 - +0.4 715,979 - -1.6 716,049 + +1.2 716,077 + +0.6 716,077 + +1.5 716,077 + +0.0 716,077 + -2.6 716,077 + +1.1 716,077 + +1.2 716,078 - +0.4 716,078 - -0.3 716,082 + +0.6 716,236 - -0.5 716,336 + -1.5 716,337 - +0.5 716,337 - +0.9 716,337 - -2.5 716,337 - -0.9 716,438 - -0.9 716,477 + +0.1 716,478 - +1.1 716,480 + -1.0 716,481 - -2.5 716,582 - -1.1 716,587 + SM_b21079 0.10 -0.4 716,588 - SM_b21079 0.10 -2.1 716,588 - SM_b21079 0.10 +0.3 716,588 - SM_b21079 0.10 +0.3 716,588 - SM_b21079 0.10 -1.3 716,627 + SM_b21079 0.16 -0.8 716,648 - SM_b21079 0.18 -0.9 716,769 + SM_b21079 0.35 -0.6 716,769 + SM_b21079 0.35 +1.3 716,769 + SM_b21079 0.35 +0.4 716,832 + SM_b21079 0.44 -0.7 716,832 + SM_b21079 0.44 -1.7 717,012 + SM_b21079 0.68 +0.1 717,013 - SM_b21079 0.68 +0.5 717,013 - SM_b21079 0.68 +0.1 717,065 + SM_b21079 0.75 -3.8 717,065 + SM_b21079 0.75 -1.7 717,066 - SM_b21079 0.76 +1.7 717,140 + +1.1 717,369 - +0.8 717,369 - +0.2 717,543 + -3.5 717,562 + +2.4 717,613 + -0.1 717,614 - -0.6 717,643 + -1.3 717,643 + SM_b21080 0.12 -1.9 717,643 + SM_b21080 0.12 +1.4 717,646 + SM_b21080 0.12 +1.2 717,646 + SM_b21080 0.12 +0.2 717,658 + SM_b21080 0.14 +1.2 717,658 + SM_b21080 0.14 +0.0 717,659 - SM_b21080 0.14 -1.3 717,748 + SM_b21080 0.25 +0.2 717,765 + SM_b21080 0.27 +0.6 717,766 - SM_b21080 0.27 +1.7 717,986 + SM_b21080 0.53 +1.3 717,986 + SM_b21080 0.53 -3.5 717,986 + SM_b21080 0.53 -0.1 717,987 - SM_b21080 0.54 +1.1 717,987 - SM_b21080 0.54 +0.2 717,987 - SM_b21080 0.54 -0.1 717,987 - SM_b21080 0.54 -0.2 717,988 + SM_b21080 0.54 +0.7 717,988 + SM_b21080 0.54 +0.4 717,988 + SM_b21080 0.54 +0.7 717,989 - SM_b21080 0.54 +2.9 718,053 + SM_b21080 0.62 -0.6 718,053 + SM_b21080 0.62 +1.4 718,123 + SM_b21080 0.70 -0.5 718,124 - SM_b21080 0.70 +1.2 718,203 - SM_b21080 0.80 +0.3 718,231 - SM_b21080 0.83 +0.1
Or see this region's nucleotide sequence