Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21068

Experiment: copper (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21067 and SM_b21068 are separated by 308 nucleotidesSM_b21068 and SM_b21069 are separated by 316 nucleotides SM_b21067: SM_b21067 - NDP-hexose methyltransferase, at 701,131 to 702,336 _b21067 SM_b21068: SM_b21068 - glycosyltransferase, at 702,645 to 703,658 _b21068 SM_b21069: SM_b21069 - hypothetical protein, at 703,975 to 705,393 _b21069 Position (kb) 702 703 704Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 701.667 kb on - strand, within SM_b21067at 701.667 kb on - strand, within SM_b21067at 701.669 kb on + strand, within SM_b21067at 701.669 kb on + strand, within SM_b21067at 701.670 kb on - strand, within SM_b21067at 701.670 kb on - strand, within SM_b21067at 701.742 kb on + strand, within SM_b21067at 701.742 kb on + strand, within SM_b21067at 701.742 kb on + strand, within SM_b21067at 701.797 kb on - strand, within SM_b21067at 701.808 kb on + strand, within SM_b21067at 701.808 kb on + strand, within SM_b21067at 701.824 kb on + strand, within SM_b21067at 701.846 kb on + strand, within SM_b21067at 701.846 kb on + strand, within SM_b21067at 702.032 kb on - strand, within SM_b21067at 702.032 kb on - strand, within SM_b21067at 702.032 kb on - strand, within SM_b21067at 702.116 kb on + strand, within SM_b21067at 702.141 kb on + strand, within SM_b21067at 702.141 kb on + strand, within SM_b21067at 702.174 kb on - strand, within SM_b21067at 702.193 kb on + strand, within SM_b21067at 702.279 kb on + strandat 702.397 kb on + strandat 702.398 kb on - strandat 702.398 kb on - strandat 702.501 kb on + strandat 702.523 kb on + strandat 702.523 kb on + strandat 702.602 kb on + strandat 702.603 kb on - strandat 702.603 kb on - strandat 702.758 kb on + strand, within SM_b21068at 702.785 kb on + strand, within SM_b21068at 702.827 kb on - strand, within SM_b21068at 702.890 kb on + strand, within SM_b21068at 702.901 kb on - strand, within SM_b21068at 702.901 kb on - strand, within SM_b21068at 702.958 kb on + strand, within SM_b21068at 702.958 kb on + strand, within SM_b21068at 702.959 kb on - strand, within SM_b21068at 703.007 kb on + strand, within SM_b21068at 703.105 kb on + strand, within SM_b21068at 703.146 kb on + strand, within SM_b21068at 703.146 kb on + strand, within SM_b21068at 703.251 kb on - strand, within SM_b21068at 703.266 kb on - strand, within SM_b21068at 703.301 kb on + strand, within SM_b21068at 703.301 kb on + strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.303 kb on + strand, within SM_b21068at 703.303 kb on + strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.305 kb on + strand, within SM_b21068at 703.305 kb on + strand, within SM_b21068at 703.306 kb on - strand, within SM_b21068at 703.362 kb on + strand, within SM_b21068at 703.362 kb on + strand, within SM_b21068at 703.362 kb on + strand, within SM_b21068at 703.363 kb on - strand, within SM_b21068at 703.363 kb on - strand, within SM_b21068at 703.364 kb on + strand, within SM_b21068at 703.365 kb on - strand, within SM_b21068at 703.437 kb on - strand, within SM_b21068at 703.481 kb on + strand, within SM_b21068at 703.481 kb on + strand, within SM_b21068at 703.481 kb on + strand, within SM_b21068at 703.482 kb on - strand, within SM_b21068at 703.482 kb on - strand, within SM_b21068at 703.482 kb on - strand, within SM_b21068at 703.576 kb on + strandat 703.577 kb on - strandat 703.577 kb on - strandat 703.663 kb on + strandat 703.683 kb on + strandat 703.683 kb on + strandat 703.683 kb on + strandat 703.684 kb on - strandat 703.788 kb on + strandat 703.788 kb on + strandat 703.789 kb on - strandat 703.857 kb on - strandat 703.883 kb on + strandat 703.884 kb on - strandat 704.003 kb on + strandat 704.003 kb on + strandat 704.003 kb on + strandat 704.003 kb on + strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.042 kb on + strandat 704.042 kb on + strandat 704.043 kb on - strandat 704.078 kb on - strandat 704.169 kb on - strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.247 kb on - strand, within SM_b21069at 704.252 kb on + strand, within SM_b21069at 704.252 kb on + strand, within SM_b21069at 704.253 kb on - strand, within SM_b21069at 704.253 kb on - strand, within SM_b21069at 704.253 kb on - strand, within SM_b21069at 704.368 kb on + strand, within SM_b21069at 704.368 kb on + strand, within SM_b21069at 704.368 kb on + strand, within SM_b21069at 704.413 kb on + strand, within SM_b21069at 704.414 kb on - strand, within SM_b21069at 704.458 kb on + strand, within SM_b21069at 704.458 kb on + strand, within SM_b21069at 704.458 kb on + strand, within SM_b21069at 704.458 kb on + strand, within SM_b21069at 704.459 kb on - strand, within SM_b21069at 704.459 kb on - strand, within SM_b21069at 704.462 kb on - strand, within SM_b21069at 704.616 kb on + strand, within SM_b21069at 704.617 kb on - strand, within SM_b21069at 704.617 kb on - strand, within SM_b21069at 704.631 kb on + strand, within SM_b21069at 704.631 kb on + strand, within SM_b21069at 704.631 kb on + strand, within SM_b21069at 704.631 kb on + strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.635 kb on + strand, within SM_b21069at 704.635 kb on + strand, within SM_b21069at 704.635 kb on + strand, within SM_b21069at 704.636 kb on - strand, within SM_b21069

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
remove
701,667 - SM_b21067 0.44 +0.3
701,667 - SM_b21067 0.44 +0.7
701,669 + SM_b21067 0.45 +0.9
701,669 + SM_b21067 0.45 +0.5
701,670 - SM_b21067 0.45 -3.6
701,670 - SM_b21067 0.45 +0.8
701,742 + SM_b21067 0.51 +0.4
701,742 + SM_b21067 0.51 -0.5
701,742 + SM_b21067 0.51 +2.9
701,797 - SM_b21067 0.55 -1.6
701,808 + SM_b21067 0.56 +1.5
701,808 + SM_b21067 0.56 -0.6
701,824 + SM_b21067 0.57 -4.4
701,846 + SM_b21067 0.59 -0.0
701,846 + SM_b21067 0.59 +1.9
702,032 - SM_b21067 0.75 +0.6
702,032 - SM_b21067 0.75 +1.0
702,032 - SM_b21067 0.75 +2.6
702,116 + SM_b21067 0.82 -0.5
702,141 + SM_b21067 0.84 +0.8
702,141 + SM_b21067 0.84 +0.7
702,174 - SM_b21067 0.86 +0.6
702,193 + SM_b21067 0.88 +1.1
702,279 + +0.0
702,397 + -0.1
702,398 - +1.3
702,398 - -1.2
702,501 + +0.7
702,523 + +0.1
702,523 + -0.1
702,602 + -3.1
702,603 - +0.2
702,603 - -1.9
702,758 + SM_b21068 0.11 -0.8
702,785 + SM_b21068 0.14 -1.6
702,827 - SM_b21068 0.18 +0.3
702,890 + SM_b21068 0.24 +0.0
702,901 - SM_b21068 0.25 -0.1
702,901 - SM_b21068 0.25 +0.2
702,958 + SM_b21068 0.31 +0.2
702,958 + SM_b21068 0.31 -1.1
702,959 - SM_b21068 0.31 +0.2
703,007 + SM_b21068 0.36 -0.0
703,105 + SM_b21068 0.45 +0.5
703,146 + SM_b21068 0.49 -1.1
703,146 + SM_b21068 0.49 -2.8
703,251 - SM_b21068 0.60 -1.2
703,266 - SM_b21068 0.61 +0.9
703,301 + SM_b21068 0.65 -0.1
703,301 + SM_b21068 0.65 +0.1
703,302 - SM_b21068 0.65 +1.4
703,302 - SM_b21068 0.65 -0.0
703,302 - SM_b21068 0.65 +0.1
703,302 - SM_b21068 0.65 -3.6
703,302 - SM_b21068 0.65 -3.2
703,302 - SM_b21068 0.65 -1.6
703,303 + SM_b21068 0.65 -0.8
703,303 + SM_b21068 0.65 -3.1
703,304 - SM_b21068 0.65 -0.6
703,304 - SM_b21068 0.65 -0.9
703,304 - SM_b21068 0.65 -1.2
703,304 - SM_b21068 0.65 -4.0
703,305 + SM_b21068 0.65 -1.4
703,305 + SM_b21068 0.65 -1.2
703,306 - SM_b21068 0.65 -0.4
703,362 + SM_b21068 0.71 -1.0
703,362 + SM_b21068 0.71 -1.4
703,362 + SM_b21068 0.71 -0.3
703,363 - SM_b21068 0.71 +0.4
703,363 - SM_b21068 0.71 +1.7
703,364 + SM_b21068 0.71 +0.1
703,365 - SM_b21068 0.71 +3.1
703,437 - SM_b21068 0.78 -0.2
703,481 + SM_b21068 0.82 +0.3
703,481 + SM_b21068 0.82 +0.2
703,481 + SM_b21068 0.82 +0.9
703,482 - SM_b21068 0.83 +0.3
703,482 - SM_b21068 0.83 -2.8
703,482 - SM_b21068 0.83 +1.0
703,576 + +0.6
703,577 - -0.9
703,577 - +0.4
703,663 + +1.1
703,683 + +0.2
703,683 + -0.3
703,683 + -2.1
703,684 - -2.2
703,788 + +0.8
703,788 + +0.6
703,789 - -0.0
703,857 - +0.7
703,883 + -0.1
703,884 - +0.6
704,003 + +2.9
704,003 + -0.4
704,003 + -1.7
704,003 + +1.2
704,004 - +0.5
704,004 - +0.8
704,004 - -0.8
704,004 - -2.8
704,004 - -2.6
704,004 - -2.9
704,042 + +0.2
704,042 + -2.1
704,043 - -0.2
704,078 - +1.3
704,169 - SM_b21069 0.14 -0.6
704,246 + SM_b21069 0.19 -2.7
704,246 + SM_b21069 0.19 +0.5
704,246 + SM_b21069 0.19 -1.8
704,246 + SM_b21069 0.19 +0.1
704,246 + SM_b21069 0.19 +1.7
704,246 + SM_b21069 0.19 -1.4
704,246 + SM_b21069 0.19 +0.6
704,247 - SM_b21069 0.19 +0.3
704,252 + SM_b21069 0.20 -2.4
704,252 + SM_b21069 0.20 +0.1
704,253 - SM_b21069 0.20 +0.9
704,253 - SM_b21069 0.20 +0.1
704,253 - SM_b21069 0.20 +0.7
704,368 + SM_b21069 0.28 -1.2
704,368 + SM_b21069 0.28 +1.8
704,368 + SM_b21069 0.28 -3.4
704,413 + SM_b21069 0.31 +2.5
704,414 - SM_b21069 0.31 -2.2
704,458 + SM_b21069 0.34 -1.2
704,458 + SM_b21069 0.34 +1.2
704,458 + SM_b21069 0.34 +0.0
704,458 + SM_b21069 0.34 -0.8
704,459 - SM_b21069 0.34 +0.6
704,459 - SM_b21069 0.34 +0.0
704,462 - SM_b21069 0.34 +0.2
704,616 + SM_b21069 0.45 -0.2
704,617 - SM_b21069 0.45 -0.5
704,617 - SM_b21069 0.45 -1.2
704,631 + SM_b21069 0.46 +0.2
704,631 + SM_b21069 0.46 -1.5
704,631 + SM_b21069 0.46 +0.3
704,631 + SM_b21069 0.46 +0.5
704,632 - SM_b21069 0.46 +0.7
704,632 - SM_b21069 0.46 +0.4
704,632 - SM_b21069 0.46 -0.2
704,632 - SM_b21069 0.46 -0.4
704,632 - SM_b21069 0.46 -2.0
704,635 + SM_b21069 0.47 -0.4
704,635 + SM_b21069 0.47 -3.8
704,635 + SM_b21069 0.47 +0.7
704,636 - SM_b21069 0.47 +2.1

Or see this region's nucleotide sequence