Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21067

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21065 and SM_b21066 overlap by 4 nucleotidesSM_b21066 and SM_b21067 are separated by 15 nucleotidesSM_b21067 and SM_b21068 are separated by 308 nucleotides SM_b21065: SM_b21065 - hypothetical protein, at 699,188 to 700,165 _b21065 SM_b21066: SM_b21066 - glycosyltransferase, at 700,162 to 701,115 _b21066 SM_b21067: SM_b21067 - NDP-hexose methyltransferase, at 701,131 to 702,336 _b21067 SM_b21068: SM_b21068 - glycosyltransferase, at 702,645 to 703,658 _b21068 Position (kb) 701 702 703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 700.165 kb on + strandat 700.166 kb on - strandat 700.199 kb on - strandat 700.207 kb on + strandat 700.356 kb on + strand, within SM_b21066at 700.356 kb on + strand, within SM_b21066at 700.571 kb on + strand, within SM_b21066at 700.571 kb on + strand, within SM_b21066at 700.571 kb on + strand, within SM_b21066at 700.571 kb on + strand, within SM_b21066at 700.572 kb on - strand, within SM_b21066at 700.572 kb on - strand, within SM_b21066at 700.574 kb on + strand, within SM_b21066at 700.575 kb on - strand, within SM_b21066at 700.575 kb on - strand, within SM_b21066at 700.758 kb on + strand, within SM_b21066at 700.758 kb on + strand, within SM_b21066at 700.759 kb on - strand, within SM_b21066at 700.759 kb on - strand, within SM_b21066at 700.763 kb on + strand, within SM_b21066at 700.801 kb on + strand, within SM_b21066at 700.801 kb on + strand, within SM_b21066at 700.859 kb on + strand, within SM_b21066at 700.859 kb on + strand, within SM_b21066at 700.860 kb on - strand, within SM_b21066at 700.931 kb on + strand, within SM_b21066at 700.932 kb on - strand, within SM_b21066at 700.936 kb on + strand, within SM_b21066at 701.005 kb on - strand, within SM_b21066at 701.011 kb on - strand, within SM_b21066at 701.011 kb on - strand, within SM_b21066at 701.063 kb on - strandat 701.063 kb on - strandat 701.081 kb on + strandat 701.082 kb on - strandat 701.082 kb on - strandat 701.082 kb on - strandat 701.130 kb on - strandat 701.202 kb on - strandat 701.242 kb on + strandat 701.288 kb on + strand, within SM_b21067at 701.288 kb on + strand, within SM_b21067at 701.289 kb on - strand, within SM_b21067at 701.289 kb on - strand, within SM_b21067at 701.289 kb on - strand, within SM_b21067at 701.458 kb on + strand, within SM_b21067at 701.459 kb on - strand, within SM_b21067at 701.565 kb on + strand, within SM_b21067at 701.565 kb on + strand, within SM_b21067at 701.566 kb on - strand, within SM_b21067at 701.566 kb on - strand, within SM_b21067at 701.566 kb on - strand, within SM_b21067at 701.567 kb on + strand, within SM_b21067at 701.567 kb on + strand, within SM_b21067at 701.568 kb on - strand, within SM_b21067at 701.568 kb on - strand, within SM_b21067at 701.568 kb on - strand, within SM_b21067at 701.568 kb on - strandat 701.580 kb on - strand, within SM_b21067at 701.580 kb on - strand, within SM_b21067at 701.667 kb on - strand, within SM_b21067at 701.667 kb on - strand, within SM_b21067at 701.669 kb on + strand, within SM_b21067at 701.669 kb on + strand, within SM_b21067at 701.670 kb on - strand, within SM_b21067at 701.670 kb on - strand, within SM_b21067at 701.742 kb on + strand, within SM_b21067at 701.742 kb on + strand, within SM_b21067at 701.742 kb on + strand, within SM_b21067at 701.797 kb on - strand, within SM_b21067at 701.808 kb on + strand, within SM_b21067at 701.808 kb on + strand, within SM_b21067at 701.824 kb on + strand, within SM_b21067at 701.846 kb on + strand, within SM_b21067at 701.846 kb on + strand, within SM_b21067at 702.032 kb on - strand, within SM_b21067at 702.032 kb on - strand, within SM_b21067at 702.032 kb on - strand, within SM_b21067at 702.116 kb on + strand, within SM_b21067at 702.141 kb on + strand, within SM_b21067at 702.141 kb on + strand, within SM_b21067at 702.174 kb on - strand, within SM_b21067at 702.193 kb on + strand, within SM_b21067at 702.279 kb on + strandat 702.397 kb on + strandat 702.398 kb on - strandat 702.398 kb on - strandat 702.501 kb on + strandat 702.523 kb on + strandat 702.523 kb on + strandat 702.602 kb on + strandat 702.603 kb on - strandat 702.603 kb on - strandat 702.758 kb on + strand, within SM_b21068at 702.785 kb on + strand, within SM_b21068at 702.827 kb on - strand, within SM_b21068at 702.890 kb on + strand, within SM_b21068at 702.901 kb on - strand, within SM_b21068at 702.901 kb on - strand, within SM_b21068at 702.958 kb on + strand, within SM_b21068at 702.958 kb on + strand, within SM_b21068at 702.959 kb on - strand, within SM_b21068at 703.007 kb on + strand, within SM_b21068at 703.105 kb on + strand, within SM_b21068at 703.146 kb on + strand, within SM_b21068at 703.146 kb on + strand, within SM_b21068at 703.251 kb on - strand, within SM_b21068at 703.266 kb on - strand, within SM_b21068at 703.301 kb on + strand, within SM_b21068at 703.301 kb on + strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.303 kb on + strand, within SM_b21068at 703.303 kb on + strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.305 kb on + strand, within SM_b21068at 703.305 kb on + strand, within SM_b21068at 703.306 kb on - strand, within SM_b21068

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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700,165 + +0.5
700,166 - -0.9
700,199 - -0.8
700,207 + +1.9
700,356 + SM_b21066 0.20 +1.7
700,356 + SM_b21066 0.20 +0.6
700,571 + SM_b21066 0.43 +0.3
700,571 + SM_b21066 0.43 +0.1
700,571 + SM_b21066 0.43 +0.3
700,571 + SM_b21066 0.43 -0.8
700,572 - SM_b21066 0.43 -0.5
700,572 - SM_b21066 0.43 -3.3
700,574 + SM_b21066 0.43 +0.5
700,575 - SM_b21066 0.43 -0.1
700,575 - SM_b21066 0.43 +1.5
700,758 + SM_b21066 0.62 -2.0
700,758 + SM_b21066 0.62 -0.5
700,759 - SM_b21066 0.63 +0.3
700,759 - SM_b21066 0.63 +2.1
700,763 + SM_b21066 0.63 -0.1
700,801 + SM_b21066 0.67 -0.1
700,801 + SM_b21066 0.67 -0.6
700,859 + SM_b21066 0.73 -2.9
700,859 + SM_b21066 0.73 +0.4
700,860 - SM_b21066 0.73 +1.1
700,931 + SM_b21066 0.81 +1.3
700,932 - SM_b21066 0.81 +0.2
700,936 + SM_b21066 0.81 -0.2
701,005 - SM_b21066 0.88 -0.3
701,011 - SM_b21066 0.89 +0.7
701,011 - SM_b21066 0.89 +1.1
701,063 - +0.0
701,063 - -0.1
701,081 + -0.5
701,082 - -3.2
701,082 - +0.7
701,082 - -3.4
701,130 - +0.8
701,202 - +0.5
701,242 + +0.8
701,288 + SM_b21067 0.13 -1.2
701,288 + SM_b21067 0.13 +0.1
701,289 - SM_b21067 0.13 +0.5
701,289 - SM_b21067 0.13 -3.6
701,289 - SM_b21067 0.13 -0.3
701,458 + SM_b21067 0.27 +0.2
701,459 - SM_b21067 0.27 -0.6
701,565 + SM_b21067 0.36 -2.5
701,565 + SM_b21067 0.36 -2.7
701,566 - SM_b21067 0.36 +0.6
701,566 - SM_b21067 0.36 -0.3
701,566 - SM_b21067 0.36 -3.5
701,567 + SM_b21067 0.36 +1.6
701,567 + SM_b21067 0.36 +1.6
701,568 - SM_b21067 0.36 +0.5
701,568 - SM_b21067 0.36 +0.1
701,568 - SM_b21067 0.36 +0.2
701,568 - -0.5
701,580 - SM_b21067 0.37 +2.4
701,580 - SM_b21067 0.37 -0.1
701,667 - SM_b21067 0.44 +0.3
701,667 - SM_b21067 0.44 +0.7
701,669 + SM_b21067 0.45 +0.9
701,669 + SM_b21067 0.45 +0.5
701,670 - SM_b21067 0.45 -3.6
701,670 - SM_b21067 0.45 +0.8
701,742 + SM_b21067 0.51 +0.4
701,742 + SM_b21067 0.51 -0.5
701,742 + SM_b21067 0.51 +2.9
701,797 - SM_b21067 0.55 -1.6
701,808 + SM_b21067 0.56 +1.5
701,808 + SM_b21067 0.56 -0.6
701,824 + SM_b21067 0.57 -4.4
701,846 + SM_b21067 0.59 -0.0
701,846 + SM_b21067 0.59 +1.9
702,032 - SM_b21067 0.75 +0.6
702,032 - SM_b21067 0.75 +1.0
702,032 - SM_b21067 0.75 +2.6
702,116 + SM_b21067 0.82 -0.5
702,141 + SM_b21067 0.84 +0.8
702,141 + SM_b21067 0.84 +0.7
702,174 - SM_b21067 0.86 +0.6
702,193 + SM_b21067 0.88 +1.1
702,279 + +0.0
702,397 + -0.1
702,398 - +1.3
702,398 - -1.2
702,501 + +0.7
702,523 + +0.1
702,523 + -0.1
702,602 + -3.1
702,603 - +0.2
702,603 - -1.9
702,758 + SM_b21068 0.11 -0.8
702,785 + SM_b21068 0.14 -1.6
702,827 - SM_b21068 0.18 +0.3
702,890 + SM_b21068 0.24 +0.0
702,901 - SM_b21068 0.25 -0.1
702,901 - SM_b21068 0.25 +0.2
702,958 + SM_b21068 0.31 +0.2
702,958 + SM_b21068 0.31 -1.1
702,959 - SM_b21068 0.31 +0.2
703,007 + SM_b21068 0.36 -0.0
703,105 + SM_b21068 0.45 +0.5
703,146 + SM_b21068 0.49 -1.1
703,146 + SM_b21068 0.49 -2.8
703,251 - SM_b21068 0.60 -1.2
703,266 - SM_b21068 0.61 +0.9
703,301 + SM_b21068 0.65 -0.1
703,301 + SM_b21068 0.65 +0.1
703,302 - SM_b21068 0.65 +1.4
703,302 - SM_b21068 0.65 -0.0
703,302 - SM_b21068 0.65 +0.1
703,302 - SM_b21068 0.65 -3.6
703,302 - SM_b21068 0.65 -3.2
703,302 - SM_b21068 0.65 -1.6
703,303 + SM_b21068 0.65 -0.8
703,303 + SM_b21068 0.65 -3.1
703,304 - SM_b21068 0.65 -0.6
703,304 - SM_b21068 0.65 -0.9
703,304 - SM_b21068 0.65 -1.2
703,304 - SM_b21068 0.65 -4.0
703,305 + SM_b21068 0.65 -1.4
703,305 + SM_b21068 0.65 -1.2
703,306 - SM_b21068 0.65 -0.4

Or see this region's nucleotide sequence