Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21048

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21047 and SM_b21048 are separated by 126 nucleotidesSM_b21048 and SM_b21049 are separated by 45 nucleotidesSM_b21049 and SM_b21050 are separated by 212 nucleotides SM_b21047: SM_b21047 - hypothetical protein, at 679,969 to 680,235 _b21047 SM_b21048: SM_b21048 - hypothetical protein, at 680,362 to 681,807 _b21048 SM_b21049: SM_b21049 - hypothetical protein, at 681,853 to 682,011 _b21049 SM_b21050: SM_b21050 - PST type surface saccharide translocase, ExoT protein, at 682,224 to 683,777 _b21050 Position (kb) 680 681 682Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 679.450 kb on + strandat 679.450 kb on + strandat 679.451 kb on - strandat 679.451 kb on - strandat 679.452 kb on + strandat 679.453 kb on - strandat 679.553 kb on - strandat 679.662 kb on - strandat 679.666 kb on + strandat 679.785 kb on + strandat 679.804 kb on - strandat 679.807 kb on + strandat 679.808 kb on - strandat 679.808 kb on - strandat 679.808 kb on - strandat 679.808 kb on - strandat 679.808 kb on - strandat 679.862 kb on + strandat 679.862 kb on + strandat 679.863 kb on - strandat 679.863 kb on - strandat 679.893 kb on - strandat 679.912 kb on - strandat 679.919 kb on - strandat 679.948 kb on + strandat 679.971 kb on - strandat 679.981 kb on - strandat 679.981 kb on - strandat 680.061 kb on + strand, within SM_b21047at 680.101 kb on - strand, within SM_b21047at 680.142 kb on + strand, within SM_b21047at 680.143 kb on - strand, within SM_b21047at 680.143 kb on - strand, within SM_b21047at 680.360 kb on + strandat 680.360 kb on + strandat 680.363 kb on + strandat 680.363 kb on + strandat 680.364 kb on - strandat 680.364 kb on - strandat 680.410 kb on + strandat 680.410 kb on + strandat 680.411 kb on - strandat 680.411 kb on - strandat 680.411 kb on - strandat 680.411 kb on - strandat 680.602 kb on + strand, within SM_b21048at 680.623 kb on + strand, within SM_b21048at 680.624 kb on - strand, within SM_b21048at 680.626 kb on - strand, within SM_b21048at 680.650 kb on - strand, within SM_b21048at 680.763 kb on + strand, within SM_b21048at 680.763 kb on + strand, within SM_b21048at 680.763 kb on + strand, within SM_b21048at 680.766 kb on + strand, within SM_b21048at 680.766 kb on + strand, within SM_b21048at 680.775 kb on - strand, within SM_b21048at 680.864 kb on + strand, within SM_b21048at 680.864 kb on + strand, within SM_b21048at 680.865 kb on - strand, within SM_b21048at 681.005 kb on + strand, within SM_b21048at 681.093 kb on - strand, within SM_b21048at 681.093 kb on - strand, within SM_b21048at 681.098 kb on + strand, within SM_b21048at 681.206 kb on + strand, within SM_b21048at 681.207 kb on - strand, within SM_b21048at 681.294 kb on + strand, within SM_b21048at 681.294 kb on + strand, within SM_b21048at 681.294 kb on + strand, within SM_b21048at 681.321 kb on + strand, within SM_b21048at 681.349 kb on + strand, within SM_b21048at 681.359 kb on - strand, within SM_b21048at 681.359 kb on - strand, within SM_b21048at 681.359 kb on - strand, within SM_b21048at 681.392 kb on + strand, within SM_b21048at 681.472 kb on + strand, within SM_b21048at 681.472 kb on + strand, within SM_b21048at 681.473 kb on - strand, within SM_b21048at 681.527 kb on + strand, within SM_b21048at 681.528 kb on - strand, within SM_b21048at 681.528 kb on - strand, within SM_b21048at 681.528 kb on - strand, within SM_b21048at 681.647 kb on + strand, within SM_b21048at 681.647 kb on + strand, within SM_b21048at 681.648 kb on - strand, within SM_b21048at 681.648 kb on - strand, within SM_b21048at 681.749 kb on + strandat 681.750 kb on - strandat 681.753 kb on - strandat 681.753 kb on - strandat 681.753 kb on - strandat 681.753 kb on - strandat 681.753 kb on - strandat 681.758 kb on - strandat 681.758 kb on - strandat 681.758 kb on - strandat 681.761 kb on - strandat 681.782 kb on - strandat 681.855 kb on - strandat 681.920 kb on + strand, within SM_b21049at 681.921 kb on - strand, within SM_b21049at 681.921 kb on - strand, within SM_b21049at 681.942 kb on - strand, within SM_b21049at 682.037 kb on - strandat 682.037 kb on - strandat 682.083 kb on - strandat 682.128 kb on + strandat 682.128 kb on + strandat 682.129 kb on - strandat 682.209 kb on + strandat 682.209 kb on + strandat 682.231 kb on + strandat 682.232 kb on - strandat 682.232 kb on - strandat 682.232 kb on - strandat 682.232 kb on - strandat 682.252 kb on + strandat 682.265 kb on - strandat 682.292 kb on - strandat 682.441 kb on + strand, within SM_b21050at 682.441 kb on + strand, within SM_b21050at 682.442 kb on - strand, within SM_b21050at 682.442 kb on - strand, within SM_b21050at 682.495 kb on + strand, within SM_b21050at 682.496 kb on - strand, within SM_b21050at 682.496 kb on - strand, within SM_b21050at 682.693 kb on + strand, within SM_b21050at 682.694 kb on - strand, within SM_b21050

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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679,450 + +0.8
679,450 + -2.5
679,451 - -1.1
679,451 - -2.5
679,452 + +3.1
679,453 - -0.3
679,553 - +1.1
679,662 - +1.4
679,666 + -0.3
679,785 + +1.1
679,804 - +0.4
679,807 + +0.7
679,808 - +0.3
679,808 - +0.5
679,808 - +1.3
679,808 - -0.5
679,808 - +1.0
679,862 + -0.6
679,862 + -0.3
679,863 - -1.1
679,863 - -0.8
679,893 - +0.9
679,912 - -2.7
679,919 - +1.1
679,948 + +0.9
679,971 - -0.1
679,981 - +0.5
679,981 - -2.7
680,061 + SM_b21047 0.34 -1.6
680,101 - SM_b21047 0.49 -0.2
680,142 + SM_b21047 0.65 +0.8
680,143 - SM_b21047 0.65 -2.1
680,143 - SM_b21047 0.65 -4.9
680,360 + -3.3
680,360 + +0.8
680,363 + +0.2
680,363 + -0.9
680,364 - -2.7
680,364 - +0.6
680,410 + -0.7
680,410 + -0.3
680,411 - +1.1
680,411 - +1.3
680,411 - -2.5
680,411 - +1.4
680,602 + SM_b21048 0.17 -2.4
680,623 + SM_b21048 0.18 +0.0
680,624 - SM_b21048 0.18 +1.1
680,626 - SM_b21048 0.18 -0.1
680,650 - SM_b21048 0.20 +0.6
680,763 + SM_b21048 0.28 -2.6
680,763 + SM_b21048 0.28 -0.9
680,763 + SM_b21048 0.28 -0.3
680,766 + SM_b21048 0.28 +0.4
680,766 + SM_b21048 0.28 -2.0
680,775 - SM_b21048 0.29 -3.2
680,864 + SM_b21048 0.35 +0.2
680,864 + SM_b21048 0.35 -0.3
680,865 - SM_b21048 0.35 +0.8
681,005 + SM_b21048 0.44 +1.8
681,093 - SM_b21048 0.51 +0.5
681,093 - SM_b21048 0.51 +1.0
681,098 + SM_b21048 0.51 +0.1
681,206 + SM_b21048 0.58 -1.9
681,207 - SM_b21048 0.58 +0.5
681,294 + SM_b21048 0.64 -2.5
681,294 + SM_b21048 0.64 -0.7
681,294 + SM_b21048 0.64 +0.6
681,321 + SM_b21048 0.66 -0.3
681,349 + SM_b21048 0.68 +0.2
681,359 - SM_b21048 0.69 -0.5
681,359 - SM_b21048 0.69 +2.0
681,359 - SM_b21048 0.69 +0.5
681,392 + SM_b21048 0.71 -0.6
681,472 + SM_b21048 0.77 -0.1
681,472 + SM_b21048 0.77 -1.1
681,473 - SM_b21048 0.77 +1.1
681,527 + SM_b21048 0.81 +1.3
681,528 - SM_b21048 0.81 -0.7
681,528 - SM_b21048 0.81 +0.1
681,528 - SM_b21048 0.81 -2.6
681,647 + SM_b21048 0.89 +1.4
681,647 + SM_b21048 0.89 -0.8
681,648 - SM_b21048 0.89 -0.9
681,648 - SM_b21048 0.89 -0.3
681,749 + -1.9
681,750 - -1.2
681,753 - +2.5
681,753 - -2.2
681,753 - +0.2
681,753 - -3.4
681,753 - -1.3
681,758 - -1.2
681,758 - -0.8
681,758 - +2.1
681,761 - -0.1
681,782 - +0.9
681,855 - +0.7
681,920 + SM_b21049 0.42 -0.1
681,921 - SM_b21049 0.43 -0.8
681,921 - SM_b21049 0.43 +1.8
681,942 - SM_b21049 0.56 +1.9
682,037 - -1.1
682,037 - +0.7
682,083 - -0.3
682,128 + +0.6
682,128 + -1.9
682,129 - -0.4
682,209 + +0.3
682,209 + +0.2
682,231 + +0.4
682,232 - -2.4
682,232 - +0.9
682,232 - -1.5
682,232 - -3.6
682,252 + +0.9
682,265 - -1.2
682,292 - -0.4
682,441 + SM_b21050 0.14 -2.0
682,441 + SM_b21050 0.14 +1.5
682,442 - SM_b21050 0.14 -0.2
682,442 - SM_b21050 0.14 +0.4
682,495 + SM_b21050 0.17 -1.1
682,496 - SM_b21050 0.18 -0.4
682,496 - SM_b21050 0.18 +0.0
682,693 + SM_b21050 0.30 +0.4
682,694 - SM_b21050 0.30 -1.1

Or see this region's nucleotide sequence