Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21045 and SM_b21046 are separated by 95 nucleotides
SM_b21045: SM_b21045 - reverse transcriptasematurase, at 675,573 to 676,832
_b21045
SM_b21046: SM_b21046 - transposase of insertion sequence ISRm10-1, orfB C-terminus protein, at 676,928 to 677,401
_b21046
Position (kb)
676
677
678 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 677.090 kb on + strand, within SM_b21046 at 677.137 kb on - strand, within SM_b21046 at 677.209 kb on + strand, within SM_b21046 at 677.209 kb on + strand, within SM_b21046 at 677.209 kb on + strand, within SM_b21046 at 677.209 kb on + strand, within SM_b21046 at 677.210 kb on - strand, within SM_b21046 at 677.228 kb on - strand, within SM_b21046 at 677.369 kb on + strand at 677.369 kb on + strand at 677.369 kb on + strand at 677.369 kb on + strand at 677.387 kb on + strand at 677.415 kb on + strand at 677.416 kb on - strand at 677.416 kb on - strand at 677.416 kb on - strand at 677.516 kb on + strand at 677.516 kb on + strand at 677.526 kb on + strand at 677.566 kb on + strand at 677.573 kb on + strand at 677.596 kb on + strand at 677.596 kb on + strand at 677.597 kb on - strand at 677.597 kb on - strand at 677.597 kb on - strand at 677.721 kb on + strand at 677.722 kb on - strand at 677.890 kb on + strand at 677.946 kb on - strand at 677.949 kb on + strand at 677.949 kb on + strand at 677.949 kb on + strand at 677.949 kb on + strand at 677.949 kb on + strand at 677.950 kb on - strand at 678.095 kb on + strand at 678.095 kb on + strand at 678.096 kb on - strand at 678.206 kb on + strand at 678.215 kb on - strand at 678.360 kb on + strand at 678.360 kb on + strand at 678.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 677,090 + SM_b21046 0.34 +0.0 677,137 - SM_b21046 0.44 +0.7 677,209 + SM_b21046 0.59 +1.4 677,209 + SM_b21046 0.59 -0.9 677,209 + SM_b21046 0.59 -0.7 677,209 + SM_b21046 0.59 +1.2 677,210 - SM_b21046 0.59 -0.1 677,228 - SM_b21046 0.63 +1.7 677,369 + -0.1 677,369 + +0.8 677,369 + +0.4 677,369 + +0.7 677,387 + +0.2 677,415 + -4.3 677,416 - -0.3 677,416 - +0.3 677,416 - +0.7 677,516 + -1.8 677,516 + -1.2 677,526 + +1.4 677,566 + -2.1 677,573 + -0.6 677,596 + -1.3 677,596 + +2.3 677,597 - +0.1 677,597 - -0.5 677,597 - -0.1 677,721 + -0.7 677,722 - +1.1 677,890 + -0.0 677,946 - -0.1 677,949 + -2.7 677,949 + -1.0 677,949 + -0.1 677,949 + -0.4 677,949 + +0.3 677,950 - -2.0 678,095 + +0.1 678,095 + -0.3 678,096 - -0.4 678,206 + -0.8 678,215 - -0.6 678,360 + -3.2 678,360 + -1.5 678,372 - -0.1
Or see this region's nucleotide sequence