Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21040 and SM_b21041 are separated by 87 nucleotides SM_b21041 and SM_b21042 are separated by 116 nucleotides
SM_b21040: SM_b21040 - oligopeptidemurein peptide ABC transporter ATP-binding protein, at 658,113 to 659,786
_b21040
SM_b21041: SM_b21041 - hypothetical protein, at 659,874 to 661,109
_b21041
SM_b21042: SM_b21042 - peptidase T, at 661,226 to 662,467
_b21042
Position (kb) 659
660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 658.882 kb on - strand, within SM_b21040 at 658.978 kb on + strand, within SM_b21040 at 658.979 kb on - strand, within SM_b21040 at 659.484 kb on - strand, within SM_b21040 at 659.667 kb on + strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.740 kb on - strand at 659.780 kb on - strand at 659.854 kb on - strand at 659.854 kb on - strand at 660.315 kb on + strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.442 kb on - strand, within SM_b21041 at 660.463 kb on - strand, within SM_b21041 at 660.642 kb on + strand, within SM_b21041 at 660.780 kb on + strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.908 kb on + strand, within SM_b21041 at 660.908 kb on + strand, within SM_b21041 at 660.915 kb on - strand, within SM_b21041 at 660.915 kb on - strand, within SM_b21041 at 660.931 kb on - strand, within SM_b21041 at 661.125 kb on + strand at 661.125 kb on + strand at 661.140 kb on + strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.582 kb on - strand, within SM_b21042 at 661.690 kb on + strand, within SM_b21042 at 661.690 kb on + strand, within SM_b21042 at 661.691 kb on - strand, within SM_b21042
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 658,882 - SM_b21040 0.46 -1.2 658,978 + SM_b21040 0.52 +1.9 658,979 - SM_b21040 0.52 +2.0 659,484 - SM_b21040 0.82 +1.4 659,667 + -0.7 659,668 - -1.1 659,668 - +0.3 659,668 - -0.9 659,668 - -0.3 659,740 - +0.9 659,780 - +2.7 659,854 - +0.8 659,854 - +1.1 660,315 + SM_b21041 0.36 +0.7 660,316 - SM_b21041 0.36 +0.4 660,316 - SM_b21041 0.36 +0.1 660,316 - SM_b21041 0.36 -2.4 660,416 + SM_b21041 0.44 +2.3 660,416 + SM_b21041 0.44 +1.4 660,442 - SM_b21041 0.46 -1.2 660,463 - SM_b21041 0.48 -2.1 660,642 + SM_b21041 0.62 +0.6 660,780 + SM_b21041 0.73 +0.5 660,802 - SM_b21041 0.75 -0.1 660,802 - SM_b21041 0.75 -1.0 660,802 - SM_b21041 0.75 +0.6 660,908 + SM_b21041 0.84 -1.4 660,908 + SM_b21041 0.84 -0.3 660,915 - SM_b21041 0.84 -3.4 660,915 - SM_b21041 0.84 +2.4 660,931 - SM_b21041 0.86 +1.6 661,125 + +0.8 661,125 + +0.9 661,140 + +3.0 661,141 - +0.5 661,141 - +1.6 661,582 - SM_b21042 0.29 -0.2 661,690 + SM_b21042 0.37 +0.6 661,690 + SM_b21042 0.37 +1.0 661,691 - SM_b21042 0.37 -3.1
Or see this region's nucleotide sequence