Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20805 and SM_b20806 are separated by 127 nucleotides SM_b20806 and SM_b20807 are separated by 132 nucleotides SM_b20807 and SM_b20808 overlap by 25 nucleotides SM_b20808 and SM_b20809 are separated by 236 nucleotides
SM_b20805: SM_b20805 - glycosyltransferase, at 590,027 to 590,932
_b20805
SM_b20806: SM_b20806 - hypothetical protein, at 591,060 to 591,749
_b20806
SM_b20807: SM_b20807 - hypothetical protein, at 591,882 to 593,519
_b20807
SM_b20808: SM_b20808 - hypothetical protein, at 593,495 to 594,271
_b20808
SM_b20809: SM_b20809 - arabinose-5-phosphate isomerase, at 594,508 to 595,497
_b20809
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 590.904 kb on - strand at 590.953 kb on + strand at 590.963 kb on + strand at 590.963 kb on + strand at 590.964 kb on - strand at 591.011 kb on + strand at 591.012 kb on - strand at 591.078 kb on + strand at 591.079 kb on - strand at 591.079 kb on - strand at 591.134 kb on + strand, within SM_b20806 at 591.148 kb on + strand, within SM_b20806 at 591.199 kb on + strand, within SM_b20806 at 591.207 kb on + strand, within SM_b20806 at 591.258 kb on + strand, within SM_b20806 at 591.540 kb on + strand, within SM_b20806 at 591.540 kb on + strand, within SM_b20806 at 591.541 kb on - strand, within SM_b20806 at 591.544 kb on + strand, within SM_b20806 at 591.634 kb on - strand, within SM_b20806 at 591.647 kb on + strand, within SM_b20806 at 591.727 kb on + strand at 591.728 kb on - strand at 591.731 kb on + strand at 591.804 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 592.062 kb on + strand, within SM_b20807 at 592.062 kb on + strand, within SM_b20807 at 592.070 kb on - strand, within SM_b20807 at 592.070 kb on - strand, within SM_b20807 at 592.070 kb on - strand, within SM_b20807 at 592.164 kb on + strand, within SM_b20807 at 592.164 kb on + strand, within SM_b20807 at 592.164 kb on + strand, within SM_b20807 at 592.165 kb on - strand, within SM_b20807 at 592.200 kb on + strand, within SM_b20807 at 592.232 kb on - strand, within SM_b20807 at 592.238 kb on + strand, within SM_b20807 at 592.406 kb on - strand, within SM_b20807 at 592.494 kb on + strand, within SM_b20807 at 592.494 kb on + strand, within SM_b20807 at 592.495 kb on - strand, within SM_b20807 at 592.539 kb on + strand, within SM_b20807 at 592.539 kb on + strand, within SM_b20807 at 592.540 kb on - strand, within SM_b20807 at 592.551 kb on - strand, within SM_b20807 at 592.605 kb on + strand, within SM_b20807 at 592.606 kb on - strand, within SM_b20807 at 592.606 kb on - strand, within SM_b20807 at 592.671 kb on + strand, within SM_b20807 at 592.685 kb on + strand, within SM_b20807 at 592.686 kb on - strand, within SM_b20807 at 592.740 kb on - strand, within SM_b20807 at 592.839 kb on + strand, within SM_b20807 at 592.876 kb on + strand, within SM_b20807 at 592.922 kb on - strand, within SM_b20807 at 592.922 kb on - strand, within SM_b20807 at 592.924 kb on + strand, within SM_b20807 at 592.925 kb on - strand, within SM_b20807 at 592.939 kb on + strand, within SM_b20807 at 592.940 kb on - strand, within SM_b20807 at 592.940 kb on - strand, within SM_b20807 at 592.940 kb on - strand, within SM_b20807 at 593.004 kb on + strand, within SM_b20807 at 593.005 kb on - strand, within SM_b20807 at 593.005 kb on - strand, within SM_b20807 at 593.166 kb on + strand, within SM_b20807 at 593.166 kb on + strand, within SM_b20807 at 593.166 kb on + strand, within SM_b20807 at 593.360 kb on + strand at 593.457 kb on + strand at 593.484 kb on + strand at 593.484 kb on + strand at 593.497 kb on - strand at 593.498 kb on + strand at 593.703 kb on + strand, within SM_b20808 at 593.704 kb on - strand, within SM_b20808 at 593.772 kb on + strand, within SM_b20808 at 593.819 kb on - strand at 593.895 kb on + strand, within SM_b20808 at 593.895 kb on + strand, within SM_b20808 at 593.929 kb on - strand, within SM_b20808 at 593.941 kb on + strand, within SM_b20808 at 593.950 kb on + strand, within SM_b20808 at 593.950 kb on + strand, within SM_b20808 at 593.960 kb on + strand, within SM_b20808 at 593.960 kb on + strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 594.160 kb on + strand, within SM_b20808 at 594.273 kb on + strand at 594.274 kb on - strand at 594.274 kb on - strand at 594.274 kb on - strand at 594.288 kb on - strand at 594.338 kb on + strand at 594.372 kb on + strand at 594.473 kb on + strand at 594.515 kb on + strand at 594.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 590,904 - -4.5 590,953 + -0.1 590,963 + -2.7 590,963 + +2.3 590,964 - -1.8 591,011 + -0.2 591,012 - -0.9 591,078 + +1.0 591,079 - +1.4 591,079 - -1.7 591,134 + SM_b20806 0.11 -3.1 591,148 + SM_b20806 0.13 +0.2 591,199 + SM_b20806 0.20 +0.3 591,207 + SM_b20806 0.21 -1.3 591,258 + SM_b20806 0.29 +0.0 591,540 + SM_b20806 0.70 -1.9 591,540 + SM_b20806 0.70 -1.3 591,541 - SM_b20806 0.70 -0.3 591,544 + SM_b20806 0.70 -0.5 591,634 - SM_b20806 0.83 -3.1 591,647 + SM_b20806 0.85 +1.1 591,727 + -3.3 591,728 - -0.9 591,731 + +0.1 591,804 + +2.7 591,967 + -3.8 591,967 + -0.9 591,967 + +0.2 591,967 + +0.1 591,967 + +0.1 592,062 + SM_b20807 0.11 -1.3 592,062 + SM_b20807 0.11 +0.9 592,070 - SM_b20807 0.11 +0.4 592,070 - SM_b20807 0.11 +0.0 592,070 - SM_b20807 0.11 +2.9 592,164 + SM_b20807 0.17 +5.1 592,164 + SM_b20807 0.17 +0.1 592,164 + SM_b20807 0.17 -1.8 592,165 - SM_b20807 0.17 +0.2 592,200 + SM_b20807 0.19 -1.7 592,232 - SM_b20807 0.21 +0.6 592,238 + SM_b20807 0.22 +0.3 592,406 - SM_b20807 0.32 +0.8 592,494 + SM_b20807 0.37 +0.3 592,494 + SM_b20807 0.37 +1.1 592,495 - SM_b20807 0.37 -0.7 592,539 + SM_b20807 0.40 +1.4 592,539 + SM_b20807 0.40 +1.3 592,540 - SM_b20807 0.40 +0.6 592,551 - SM_b20807 0.41 +0.9 592,605 + SM_b20807 0.44 +1.7 592,606 - SM_b20807 0.44 +0.8 592,606 - SM_b20807 0.44 +0.9 592,671 + SM_b20807 0.48 +1.2 592,685 + SM_b20807 0.49 -1.9 592,686 - SM_b20807 0.49 +1.1 592,740 - SM_b20807 0.52 +0.2 592,839 + SM_b20807 0.58 +1.2 592,876 + SM_b20807 0.61 -2.3 592,922 - SM_b20807 0.63 +1.1 592,922 - SM_b20807 0.63 +1.3 592,924 + SM_b20807 0.64 -2.1 592,925 - SM_b20807 0.64 -0.9 592,939 + SM_b20807 0.65 +1.1 592,940 - SM_b20807 0.65 -2.5 592,940 - SM_b20807 0.65 -2.1 592,940 - SM_b20807 0.65 +0.2 593,004 + SM_b20807 0.68 +1.1 593,005 - SM_b20807 0.69 +1.3 593,005 - SM_b20807 0.69 +1.7 593,166 + SM_b20807 0.78 -0.8 593,166 + SM_b20807 0.78 -0.4 593,166 + SM_b20807 0.78 +1.6 593,360 + +1.0 593,457 + +1.9 593,484 + +0.6 593,484 + +0.7 593,497 - +1.1 593,498 + +1.3 593,703 + SM_b20808 0.27 +1.1 593,704 - SM_b20808 0.27 -0.8 593,772 + SM_b20808 0.36 +1.3 593,819 - +1.1 593,895 + SM_b20808 0.51 +0.3 593,895 + SM_b20808 0.51 +1.0 593,929 - SM_b20808 0.56 +0.3 593,941 + SM_b20808 0.57 -0.9 593,950 + SM_b20808 0.59 +1.1 593,950 + SM_b20808 0.59 -0.4 593,960 + SM_b20808 0.60 +2.4 593,960 + SM_b20808 0.60 -1.5 593,979 - SM_b20808 0.62 +0.5 593,979 - SM_b20808 0.62 +0.3 593,979 - SM_b20808 0.62 +0.4 593,979 - SM_b20808 0.62 +0.8 593,982 + SM_b20808 0.63 +0.4 593,982 + SM_b20808 0.63 +0.6 593,982 + SM_b20808 0.63 +0.9 593,982 + SM_b20808 0.63 +1.3 593,983 - SM_b20808 0.63 -2.6 593,983 - SM_b20808 0.63 +0.9 593,983 - SM_b20808 0.63 +1.0 593,983 - SM_b20808 0.63 -2.4 593,983 - SM_b20808 0.63 +1.3 594,160 + SM_b20808 0.86 +2.3 594,273 + -1.9 594,274 - -0.2 594,274 - +1.6 594,274 - +1.1 594,288 - +1.8 594,338 + -1.6 594,372 + -0.8 594,473 + +0.3 594,515 + +0.7 594,516 - +1.5
Or see this region's nucleotide sequence