Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20803 and SM_b20804 are separated by 42 nucleotides SM_b20804 and SM_b20805 are separated by 62 nucleotides SM_b20805 and SM_b20806 are separated by 127 nucleotides SM_b20806 and SM_b20807 are separated by 132 nucleotides
SM_b20803: SM_b20803 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 588,360 to 589,190
_b20803
SM_b20804: SM_b20804 - hypothetical protein, at 589,233 to 589,964
_b20804
SM_b20805: SM_b20805 - glycosyltransferase, at 590,027 to 590,932
_b20805
SM_b20806: SM_b20806 - hypothetical protein, at 591,060 to 591,749
_b20806
SM_b20807: SM_b20807 - hypothetical protein, at 591,882 to 593,519
_b20807
Position (kb) 590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 589.109 kb on - strand at 589.189 kb on - strand at 589.189 kb on - strand at 589.192 kb on + strand at 589.193 kb on - strand at 589.267 kb on + strand at 589.267 kb on + strand at 589.268 kb on - strand at 589.268 kb on - strand at 589.270 kb on - strand at 589.331 kb on + strand, within SM_b20804 at 589.348 kb on + strand, within SM_b20804 at 589.349 kb on - strand, within SM_b20804 at 589.463 kb on + strand, within SM_b20804 at 589.464 kb on - strand, within SM_b20804 at 589.464 kb on - strand, within SM_b20804 at 589.464 kb on - strand, within SM_b20804 at 589.554 kb on + strand, within SM_b20804 at 589.554 kb on + strand, within SM_b20804 at 589.555 kb on - strand, within SM_b20804 at 589.558 kb on + strand, within SM_b20804 at 589.558 kb on + strand, within SM_b20804 at 589.558 kb on + strand, within SM_b20804 at 589.559 kb on - strand, within SM_b20804 at 589.559 kb on - strand, within SM_b20804 at 589.559 kb on - strand, within SM_b20804 at 589.731 kb on - strand, within SM_b20804 at 589.755 kb on + strand, within SM_b20804 at 589.816 kb on - strand, within SM_b20804 at 589.974 kb on + strand at 589.974 kb on + strand at 589.974 kb on + strand at 589.975 kb on - strand at 590.082 kb on + strand at 590.083 kb on - strand at 590.242 kb on + strand, within SM_b20805 at 590.365 kb on - strand, within SM_b20805 at 590.388 kb on + strand, within SM_b20805 at 590.388 kb on + strand, within SM_b20805 at 590.431 kb on + strand, within SM_b20805 at 590.432 kb on - strand, within SM_b20805 at 590.432 kb on - strand, within SM_b20805 at 590.432 kb on - strand, within SM_b20805 at 590.457 kb on + strand, within SM_b20805 at 590.458 kb on - strand, within SM_b20805 at 590.508 kb on + strand, within SM_b20805 at 590.534 kb on + strand, within SM_b20805 at 590.579 kb on + strand, within SM_b20805 at 590.747 kb on + strand, within SM_b20805 at 590.751 kb on - strand, within SM_b20805 at 590.751 kb on - strand, within SM_b20805 at 590.751 kb on - strand, within SM_b20805 at 590.765 kb on - strand, within SM_b20805 at 590.765 kb on - strand, within SM_b20805 at 590.830 kb on + strand, within SM_b20805 at 590.831 kb on - strand, within SM_b20805 at 590.833 kb on - strand, within SM_b20805 at 590.904 kb on - strand at 590.953 kb on + strand at 590.963 kb on + strand at 590.963 kb on + strand at 590.964 kb on - strand at 591.011 kb on + strand at 591.012 kb on - strand at 591.078 kb on + strand at 591.079 kb on - strand at 591.079 kb on - strand at 591.134 kb on + strand, within SM_b20806 at 591.148 kb on + strand, within SM_b20806 at 591.199 kb on + strand, within SM_b20806 at 591.207 kb on + strand, within SM_b20806 at 591.258 kb on + strand, within SM_b20806 at 591.540 kb on + strand, within SM_b20806 at 591.540 kb on + strand, within SM_b20806 at 591.541 kb on - strand, within SM_b20806 at 591.544 kb on + strand, within SM_b20806 at 591.634 kb on - strand, within SM_b20806 at 591.647 kb on + strand, within SM_b20806 at 591.727 kb on + strand at 591.728 kb on - strand at 591.731 kb on + strand at 591.804 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 589,109 - +0.3 589,189 - -3.2 589,189 - -0.0 589,192 + +1.1 589,193 - -2.5 589,267 + +0.3 589,267 + +1.6 589,268 - -2.4 589,268 - -0.3 589,270 - -1.4 589,331 + SM_b20804 0.13 +1.1 589,348 + SM_b20804 0.16 +1.2 589,349 - SM_b20804 0.16 -1.0 589,463 + SM_b20804 0.31 +1.9 589,464 - SM_b20804 0.32 -3.5 589,464 - SM_b20804 0.32 +0.6 589,464 - SM_b20804 0.32 -1.8 589,554 + SM_b20804 0.44 -1.9 589,554 + SM_b20804 0.44 -1.0 589,555 - SM_b20804 0.44 -1.3 589,558 + SM_b20804 0.44 +0.7 589,558 + SM_b20804 0.44 +1.2 589,558 + SM_b20804 0.44 -2.9 589,559 - SM_b20804 0.45 -2.4 589,559 - SM_b20804 0.45 -1.3 589,559 - SM_b20804 0.45 -0.4 589,731 - SM_b20804 0.68 -2.9 589,755 + SM_b20804 0.71 +1.1 589,816 - SM_b20804 0.80 -2.1 589,974 + -3.0 589,974 + +0.1 589,974 + +0.3 589,975 - +1.0 590,082 + -1.4 590,083 - -1.1 590,242 + SM_b20805 0.24 -0.9 590,365 - SM_b20805 0.37 -2.9 590,388 + SM_b20805 0.40 -0.9 590,388 + SM_b20805 0.40 -3.1 590,431 + SM_b20805 0.45 -2.1 590,432 - SM_b20805 0.45 +0.4 590,432 - SM_b20805 0.45 -2.7 590,432 - SM_b20805 0.45 +0.0 590,457 + SM_b20805 0.47 -2.8 590,458 - SM_b20805 0.48 -2.9 590,508 + SM_b20805 0.53 -1.1 590,534 + SM_b20805 0.56 -4.5 590,579 + SM_b20805 0.61 +0.4 590,747 + SM_b20805 0.79 -0.9 590,751 - SM_b20805 0.80 +0.6 590,751 - SM_b20805 0.80 -1.1 590,751 - SM_b20805 0.80 -0.3 590,765 - SM_b20805 0.81 +0.1 590,765 - SM_b20805 0.81 -3.2 590,830 + SM_b20805 0.89 -3.2 590,831 - SM_b20805 0.89 -3.5 590,833 - SM_b20805 0.89 -1.5 590,904 - -4.5 590,953 + -0.1 590,963 + -2.7 590,963 + +2.3 590,964 - -1.8 591,011 + -0.2 591,012 - -0.9 591,078 + +1.0 591,079 - +1.4 591,079 - -1.7 591,134 + SM_b20806 0.11 -3.1 591,148 + SM_b20806 0.13 +0.2 591,199 + SM_b20806 0.20 +0.3 591,207 + SM_b20806 0.21 -1.3 591,258 + SM_b20806 0.29 +0.0 591,540 + SM_b20806 0.70 -1.9 591,540 + SM_b20806 0.70 -1.3 591,541 - SM_b20806 0.70 -0.3 591,544 + SM_b20806 0.70 -0.5 591,634 - SM_b20806 0.83 -3.1 591,647 + SM_b20806 0.85 +1.1 591,727 + -3.3 591,728 - -0.9 591,731 + +0.1 591,804 + +2.7
Or see this region's nucleotide sequence