Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20704 and SM_b20705 are separated by 314 nucleotides SM_b20705 and SM_b20706 are separated by 133 nucleotides SM_b20706 and SM_b20707 are separated by 51 nucleotides
SM_b20704: SM_b20704 - glycogen synthase, at 1,505,461 to 1,506,921
_b20704
SM_b20705: SM_b20705 - hypothetical protein, at 1,507,236 to 1,508,147
_b20705
SM_b20706: SM_b20706 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,508,281 to 1,509,057
_b20706
SM_b20707: SM_b20707 - adenylate cyclase, at 1,509,109 to 1,510,371
_b20707
Position (kb)
1507
1508
1509 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1506.254 kb on - strand, within SM_b20704 at 1506.254 kb on - strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.510 kb on - strand, within SM_b20704 at 1506.611 kb on - strand, within SM_b20704 at 1506.617 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.720 kb on - strand, within SM_b20704 at 1506.749 kb on + strand, within SM_b20704 at 1506.749 kb on + strand, within SM_b20704 at 1506.750 kb on - strand, within SM_b20704 at 1506.862 kb on + strand at 1507.097 kb on + strand at 1507.097 kb on + strand at 1507.098 kb on - strand at 1507.098 kb on - strand at 1507.305 kb on - strand at 1507.368 kb on + strand, within SM_b20705 at 1507.391 kb on + strand, within SM_b20705 at 1507.439 kb on - strand, within SM_b20705 at 1507.543 kb on - strand, within SM_b20705 at 1507.569 kb on + strand, within SM_b20705 at 1507.569 kb on + strand, within SM_b20705 at 1507.570 kb on - strand, within SM_b20705 at 1507.590 kb on + strand, within SM_b20705 at 1507.590 kb on + strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.991 kb on + strand, within SM_b20705 at 1507.991 kb on + strand, within SM_b20705 at 1507.991 kb on + strand, within SM_b20705 at 1507.992 kb on - strand, within SM_b20705 at 1507.992 kb on - strand, within SM_b20705 at 1507.997 kb on - strand, within SM_b20705 at 1507.997 kb on - strand, within SM_b20705 at 1508.137 kb on + strand at 1508.146 kb on - strand at 1508.233 kb on - strand at 1508.377 kb on + strand, within SM_b20706 at 1508.527 kb on + strand, within SM_b20706 at 1508.527 kb on + strand, within SM_b20706 at 1508.597 kb on - strand, within SM_b20706 at 1508.597 kb on - strand, within SM_b20706 at 1508.713 kb on + strand, within SM_b20706 at 1508.926 kb on - strand, within SM_b20706 at 1509.004 kb on + strand at 1509.005 kb on - strand at 1509.005 kb on - strand at 1509.005 kb on - strand at 1509.005 kb on - strand at 1509.025 kb on + strand at 1509.026 kb on - strand at 1509.026 kb on - strand at 1509.043 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,506,254 - SM_b20704 0.54 -3.0 1,506,254 - SM_b20704 0.54 +0.7 1,506,509 + SM_b20704 0.72 -1.0 1,506,509 + SM_b20704 0.72 +1.2 1,506,509 + SM_b20704 0.72 -2.1 1,506,509 + SM_b20704 0.72 +1.8 1,506,509 + SM_b20704 0.72 +1.0 1,506,510 - SM_b20704 0.72 -1.0 1,506,611 - SM_b20704 0.79 -2.5 1,506,617 + SM_b20704 0.79 -3.8 1,506,719 + SM_b20704 0.86 -2.2 1,506,719 + SM_b20704 0.86 -0.2 1,506,719 + SM_b20704 0.86 +1.1 1,506,720 - SM_b20704 0.86 +0.0 1,506,749 + SM_b20704 0.88 +2.7 1,506,749 + SM_b20704 0.88 +2.4 1,506,750 - SM_b20704 0.88 -1.1 1,506,862 + -1.8 1,507,097 + -0.3 1,507,097 + -0.3 1,507,098 - -2.6 1,507,098 - +2.8 1,507,305 - +0.3 1,507,368 + SM_b20705 0.14 +1.0 1,507,391 + SM_b20705 0.17 -1.5 1,507,439 - SM_b20705 0.22 -0.8 1,507,543 - SM_b20705 0.34 -0.6 1,507,569 + SM_b20705 0.37 -0.9 1,507,569 + SM_b20705 0.37 -0.2 1,507,570 - SM_b20705 0.37 -1.8 1,507,590 + SM_b20705 0.39 +1.3 1,507,590 + SM_b20705 0.39 -0.7 1,507,990 - SM_b20705 0.83 -2.5 1,507,990 - SM_b20705 0.83 -0.6 1,507,990 - SM_b20705 0.83 -0.8 1,507,990 - SM_b20705 0.83 +0.2 1,507,990 - SM_b20705 0.83 +0.3 1,507,991 + SM_b20705 0.83 -1.0 1,507,991 + SM_b20705 0.83 +0.2 1,507,991 + SM_b20705 0.83 -4.5 1,507,992 - SM_b20705 0.83 +0.3 1,507,992 - SM_b20705 0.83 -1.8 1,507,997 - SM_b20705 0.83 +0.4 1,507,997 - SM_b20705 0.83 +0.2 1,508,137 + +1.0 1,508,146 - -0.3 1,508,233 - +0.4 1,508,377 + SM_b20706 0.12 +1.0 1,508,527 + SM_b20706 0.32 -1.0 1,508,527 + SM_b20706 0.32 -3.0 1,508,597 - SM_b20706 0.41 -1.5 1,508,597 - SM_b20706 0.41 +0.7 1,508,713 + SM_b20706 0.56 +0.3 1,508,926 - SM_b20706 0.83 +0.9 1,509,004 + -3.4 1,509,005 - +0.3 1,509,005 - -0.8 1,509,005 - -3.9 1,509,005 - +0.8 1,509,025 + +1.2 1,509,026 - +1.0 1,509,026 - -0.7 1,509,043 + -0.9
Or see this region's nucleotide sequence