Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20667 and SM_b20668 are separated by 142 nucleotides SM_b20668 and SM_b20669 are separated by 11 nucleotides SM_b20669 and SM_b20670 are separated by 3 nucleotides
SM_b20667: SM_b20667 - LacI family transcriptional regulator, at 1,467,800 to 1,468,804
_b20667
SM_b20668: SM_b20668 - hypothetical protein, at 1,468,947 to 1,469,852
_b20668
SM_b20669: SM_b20669 - hydroxypyruvate isomerase, at 1,469,864 to 1,470,640
_b20669
SM_b20670: SM_b20670 - hypothetical protein, at 1,470,644 to 1,471,921
_b20670
Position (kb)
1468
1469
1470 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1468.050 kb on + strand, within SM_b20667 at 1468.236 kb on + strand, within SM_b20667 at 1468.322 kb on + strand, within SM_b20667 at 1468.322 kb on + strand, within SM_b20667 at 1468.322 kb on + strand, within SM_b20667 at 1468.483 kb on - strand, within SM_b20667 at 1468.645 kb on - strand, within SM_b20667 at 1468.855 kb on + strand at 1469.038 kb on - strand, within SM_b20668 at 1469.224 kb on + strand, within SM_b20668 at 1469.224 kb on + strand, within SM_b20668 at 1469.225 kb on - strand, within SM_b20668 at 1469.295 kb on + strand, within SM_b20668 at 1469.296 kb on - strand, within SM_b20668 at 1469.424 kb on + strand, within SM_b20668 at 1469.558 kb on - strand, within SM_b20668 at 1469.558 kb on - strand, within SM_b20668 at 1469.558 kb on - strand, within SM_b20668 at 1469.560 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.691 kb on - strand, within SM_b20668 at 1469.745 kb on + strand, within SM_b20668 at 1469.745 kb on + strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.843 kb on + strand at 1469.850 kb on + strand at 1470.221 kb on + strand, within SM_b20669 at 1470.395 kb on + strand, within SM_b20669 at 1470.395 kb on + strand, within SM_b20669 at 1470.445 kb on + strand, within SM_b20669 at 1470.446 kb on - strand, within SM_b20669 at 1470.446 kb on - strand, within SM_b20669 at 1470.463 kb on + strand, within SM_b20669 at 1470.464 kb on - strand, within SM_b20669 at 1470.518 kb on + strand, within SM_b20669 at 1470.519 kb on - strand, within SM_b20669 at 1470.519 kb on - strand, within SM_b20669 at 1470.519 kb on - strand, within SM_b20669 at 1470.524 kb on + strand, within SM_b20669 at 1470.524 kb on + strand, within SM_b20669 at 1470.525 kb on - strand, within SM_b20669 at 1470.555 kb on - strand, within SM_b20669 at 1470.578 kb on + strand at 1470.579 kb on - strand at 1470.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,468,050 + SM_b20667 0.25 -1.3 1,468,236 + SM_b20667 0.43 -1.1 1,468,322 + SM_b20667 0.52 +0.3 1,468,322 + SM_b20667 0.52 -2.5 1,468,322 + SM_b20667 0.52 +0.3 1,468,483 - SM_b20667 0.68 +0.5 1,468,645 - SM_b20667 0.84 +1.0 1,468,855 + -3.0 1,469,038 - SM_b20668 0.10 +1.6 1,469,224 + SM_b20668 0.31 -1.1 1,469,224 + SM_b20668 0.31 +0.4 1,469,225 - SM_b20668 0.31 -0.8 1,469,295 + SM_b20668 0.38 -1.3 1,469,296 - SM_b20668 0.39 -2.0 1,469,424 + SM_b20668 0.53 -0.2 1,469,558 - SM_b20668 0.67 +0.2 1,469,558 - SM_b20668 0.67 +0.4 1,469,558 - SM_b20668 0.67 +1.2 1,469,560 - SM_b20668 0.68 +0.7 1,469,635 - SM_b20668 0.76 -1.4 1,469,635 - SM_b20668 0.76 +0.2 1,469,635 - SM_b20668 0.76 -1.1 1,469,635 - SM_b20668 0.76 -0.2 1,469,691 - SM_b20668 0.82 +0.2 1,469,745 + SM_b20668 0.88 -0.1 1,469,745 + SM_b20668 0.88 +2.1 1,469,746 - SM_b20668 0.88 -1.1 1,469,746 - SM_b20668 0.88 -1.6 1,469,746 - SM_b20668 0.88 -2.6 1,469,843 + -1.5 1,469,850 + -0.1 1,470,221 + SM_b20669 0.46 -3.9 1,470,395 + SM_b20669 0.68 -1.0 1,470,395 + SM_b20669 0.68 -2.1 1,470,445 + SM_b20669 0.75 -0.1 1,470,446 - SM_b20669 0.75 +1.2 1,470,446 - SM_b20669 0.75 +0.5 1,470,463 + SM_b20669 0.77 -1.1 1,470,464 - SM_b20669 0.77 +1.2 1,470,518 + SM_b20669 0.84 -2.5 1,470,519 - SM_b20669 0.84 -1.6 1,470,519 - SM_b20669 0.84 -2.9 1,470,519 - SM_b20669 0.84 -0.9 1,470,524 + SM_b20669 0.85 +1.5 1,470,524 + SM_b20669 0.85 -1.6 1,470,525 - SM_b20669 0.85 +1.0 1,470,555 - SM_b20669 0.89 +2.3 1,470,578 + -3.1 1,470,579 - -0.4 1,470,678 - -2.3
Or see this region's nucleotide sequence