Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20666

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20665 and SM_b20666 are separated by 283 nucleotidesSM_b20666 and SM_b20667 are separated by 16 nucleotides SM_b20665: SM_b20665 - partial transposase of insertion sequence ISRm17 protein, at 1,466,169 to 1,466,822 _b20665 SM_b20666: SM_b20666 - aldolase, at 1,467,106 to 1,467,783 _b20666 SM_b20667: SM_b20667 - LacI family transcriptional regulator, at 1,467,800 to 1,468,804 _b20667 Position (kb) 1467 1468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1466.136 kb on + strandat 1466.154 kb on + strandat 1466.155 kb on - strandat 1466.155 kb on - strandat 1466.280 kb on - strand, within SM_b20665at 1466.280 kb on - strand, within SM_b20665at 1466.280 kb on - strand, within SM_b20665at 1466.291 kb on + strand, within SM_b20665at 1466.963 kb on + strandat 1467.090 kb on + strandat 1467.101 kb on + strandat 1467.101 kb on + strandat 1467.101 kb on + strandat 1467.108 kb on - strandat 1467.193 kb on - strand, within SM_b20666at 1467.228 kb on - strand, within SM_b20666at 1467.228 kb on - strand, within SM_b20666at 1467.329 kb on + strand, within SM_b20666at 1467.330 kb on - strand, within SM_b20666at 1467.387 kb on - strand, within SM_b20666at 1467.422 kb on + strand, within SM_b20666at 1467.423 kb on - strand, within SM_b20666at 1467.425 kb on + strand, within SM_b20666at 1467.425 kb on + strand, within SM_b20666at 1467.539 kb on + strand, within SM_b20666at 1467.539 kb on + strand, within SM_b20666at 1467.694 kb on + strand, within SM_b20666at 1467.695 kb on - strand, within SM_b20666at 1467.821 kb on - strandat 1467.907 kb on + strand, within SM_b20667at 1467.908 kb on - strand, within SM_b20667at 1468.050 kb on + strand, within SM_b20667at 1468.236 kb on + strand, within SM_b20667at 1468.322 kb on + strand, within SM_b20667at 1468.322 kb on + strand, within SM_b20667at 1468.322 kb on + strand, within SM_b20667at 1468.483 kb on - strand, within SM_b20667at 1468.645 kb on - strand, within SM_b20667

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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1,466,136 + -0.7
1,466,154 + -0.5
1,466,155 - -0.1
1,466,155 - -0.9
1,466,280 - SM_b20665 0.17 +0.5
1,466,280 - SM_b20665 0.17 -1.0
1,466,280 - SM_b20665 0.17 -3.6
1,466,291 + SM_b20665 0.19 -0.9
1,466,963 + +0.4
1,467,090 + +1.5
1,467,101 + -0.1
1,467,101 + +2.7
1,467,101 + +0.3
1,467,108 - +1.9
1,467,193 - SM_b20666 0.13 +0.3
1,467,228 - SM_b20666 0.18 -0.1
1,467,228 - SM_b20666 0.18 -1.4
1,467,329 + SM_b20666 0.33 +0.2
1,467,330 - SM_b20666 0.33 -1.1
1,467,387 - SM_b20666 0.41 -1.2
1,467,422 + SM_b20666 0.47 -0.2
1,467,423 - SM_b20666 0.47 +2.1
1,467,425 + SM_b20666 0.47 -2.1
1,467,425 + SM_b20666 0.47 -0.2
1,467,539 + SM_b20666 0.64 +0.7
1,467,539 + SM_b20666 0.64 +0.4
1,467,694 + SM_b20666 0.87 -0.4
1,467,695 - SM_b20666 0.87 -0.4
1,467,821 - +0.2
1,467,907 + SM_b20667 0.11 -0.5
1,467,908 - SM_b20667 0.11 +0.3
1,468,050 + SM_b20667 0.25 -1.3
1,468,236 + SM_b20667 0.43 -1.1
1,468,322 + SM_b20667 0.52 +0.3
1,468,322 + SM_b20667 0.52 -2.5
1,468,322 + SM_b20667 0.52 +0.3
1,468,483 - SM_b20667 0.68 +0.5
1,468,645 - SM_b20667 0.84 +1.0

Or see this region's nucleotide sequence