Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20525 and SM_b20527 are separated by 589 nucleotides SM_b20527 and SM_b20528 are separated by 79 nucleotides SM_b20528 and SM_b20529 overlap by 14 nucleotides
SM_b20525: SM_b20525 - transcriptional regulator, at 550,946 to 551,554
_b20525
SM_b20527: SM_b20527 - hypothetical protein, at 552,144 to 552,578
_b20527
SM_b20528: SM_b20528 - hypothetical protein, at 552,658 to 553,458
_b20528
SM_b20529: SM_b20529 - hypothetical protein, at 553,445 to 554,374
_b20529
Position (kb) 552
553 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.404 kb on - strand, within SM_b20525 at 551.483 kb on + strand, within SM_b20525 at 551.494 kb on - strand at 551.544 kb on + strand at 551.544 kb on + strand at 551.545 kb on - strand at 551.601 kb on + strand at 551.682 kb on - strand at 551.711 kb on + strand at 551.711 kb on + strand at 551.899 kb on + strand at 551.900 kb on - strand at 552.092 kb on + strand at 552.093 kb on - strand at 552.209 kb on + strand, within SM_b20527 at 552.210 kb on - strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.354 kb on - strand, within SM_b20527 at 552.354 kb on - strand, within SM_b20527 at 552.406 kb on + strand, within SM_b20527 at 552.880 kb on - strand, within SM_b20528 at 552.880 kb on - strand, within SM_b20528 at 553.059 kb on - strand, within SM_b20528 at 553.121 kb on + strand, within SM_b20528 at 553.121 kb on + strand, within SM_b20528 at 553.127 kb on + strand, within SM_b20528 at 553.127 kb on + strand, within SM_b20528 at 553.135 kb on + strand, within SM_b20528 at 553.135 kb on + strand, within SM_b20528 at 553.160 kb on + strand, within SM_b20528 at 553.161 kb on - strand, within SM_b20528 at 553.288 kb on + strand, within SM_b20528 at 553.289 kb on - strand, within SM_b20528 at 553.289 kb on - strand, within SM_b20528 at 553.446 kb on + strand at 553.532 kb on + strand at 553.547 kb on + strand, within SM_b20529
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 551,206 + SM_b20525 0.43 -2.1 551,206 + SM_b20525 0.43 +1.1 551,206 + SM_b20525 0.43 +3.4 551,206 + SM_b20525 0.43 -1.8 551,394 + SM_b20525 0.74 +0.6 551,394 + SM_b20525 0.74 +0.0 551,394 + SM_b20525 0.74 -1.4 551,395 - SM_b20525 0.74 +1.6 551,395 - SM_b20525 0.74 +0.5 551,395 - SM_b20525 0.74 +0.0 551,404 - SM_b20525 0.75 -1.2 551,483 + SM_b20525 0.88 -3.1 551,494 - -1.1 551,544 + +2.7 551,544 + -0.4 551,545 - +1.0 551,601 + +1.8 551,682 - +1.1 551,711 + +0.6 551,711 + +1.2 551,899 + -0.7 551,900 - -0.5 552,092 + -0.0 552,093 - +0.7 552,209 + SM_b20527 0.15 -1.9 552,210 - SM_b20527 0.15 -0.7 552,353 + SM_b20527 0.48 -1.8 552,353 + SM_b20527 0.48 -0.9 552,353 + SM_b20527 0.48 -2.2 552,353 + SM_b20527 0.48 -0.1 552,354 - SM_b20527 0.48 -1.2 552,354 - SM_b20527 0.48 -3.5 552,406 + SM_b20527 0.60 -0.5 552,880 - SM_b20528 0.28 +0.8 552,880 - SM_b20528 0.28 +0.3 553,059 - SM_b20528 0.50 +0.0 553,121 + SM_b20528 0.58 -2.1 553,121 + SM_b20528 0.58 +0.2 553,127 + SM_b20528 0.59 -4.0 553,127 + SM_b20528 0.59 -0.3 553,135 + SM_b20528 0.60 +0.3 553,135 + SM_b20528 0.60 +0.1 553,160 + SM_b20528 0.63 +1.5 553,161 - SM_b20528 0.63 -0.5 553,288 + SM_b20528 0.79 +0.2 553,289 - SM_b20528 0.79 +1.1 553,289 - SM_b20528 0.79 +0.1 553,446 + +1.1 553,532 + -0.3 553,547 + SM_b20529 0.11 -0.0
Or see this region's nucleotide sequence