Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20505 and SM_b20506 are separated by 43 nucleotides SM_b20506 and SM_b20507 are separated by 2 nucleotides
SM_b20505: SM_b20505 - trifolitoxin immunity protein, at 527,073 to 527,861
_b20505
SM_b20506: SM_b20506 - L-arabinose transporter permease, at 527,905 to 528,858
_b20506
SM_b20507: SM_b20507 - L-arabinose transporter ATP-binding protein, at 528,861 to 530,387
_b20507
Position (kb) 527
528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 526.928 kb on + strand at 526.938 kb on + strand at 526.939 kb on - strand at 527.017 kb on - strand at 527.017 kb on - strand at 527.042 kb on + strand at 527.043 kb on - strand at 527.061 kb on + strand at 527.062 kb on - strand at 527.062 kb on - strand at 527.188 kb on + strand, within SM_b20505 at 527.188 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.333 kb on - strand, within SM_b20505 at 527.353 kb on + strand, within SM_b20505 at 527.353 kb on + strand, within SM_b20505 at 527.644 kb on + strand, within SM_b20505 at 527.658 kb on + strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.857 kb on + strand at 527.857 kb on + strand at 527.857 kb on + strand at 527.858 kb on - strand at 527.858 kb on - strand at 527.858 kb on - strand at 527.860 kb on - strand at 527.887 kb on + strand at 527.937 kb on + strand at 527.937 kb on + strand at 527.938 kb on - strand at 527.984 kb on + strand at 527.990 kb on + strand at 527.990 kb on + strand at 527.991 kb on - strand at 527.991 kb on - strand at 527.991 kb on - strand at 528.053 kb on - strand, within SM_b20506 at 528.202 kb on + strand, within SM_b20506 at 528.203 kb on - strand, within SM_b20506 at 528.316 kb on - strand, within SM_b20506 at 528.470 kb on - strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.589 kb on + strand, within SM_b20506 at 528.640 kb on + strand, within SM_b20506 at 528.867 kb on + strand at 528.867 kb on + strand at 528.867 kb on + strand at 528.867 kb on + strand at 528.868 kb on - strand at 528.868 kb on - strand at 528.868 kb on - strand at 528.868 kb on - strand at 529.034 kb on + strand, within SM_b20507 at 529.281 kb on - strand, within SM_b20507 at 529.489 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.805 kb on - strand, within SM_b20507 at 529.805 kb on - strand, within SM_b20507 at 529.817 kb on + strand, within SM_b20507
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 526,928 + +0.5 526,938 + -0.1 526,939 - -0.5 527,017 - +0.1 527,017 - -0.5 527,042 + -0.1 527,043 - +0.9 527,061 + -1.6 527,062 - -0.7 527,062 - +0.9 527,188 + SM_b20505 0.15 -1.5 527,188 + SM_b20505 0.15 -1.1 527,274 + SM_b20505 0.25 -1.5 527,274 + SM_b20505 0.25 +1.3 527,274 + SM_b20505 0.25 -0.6 527,274 + SM_b20505 0.25 -2.8 527,275 - SM_b20505 0.26 -0.6 527,275 - SM_b20505 0.26 +1.0 527,275 - SM_b20505 0.26 +0.4 527,333 - SM_b20505 0.33 +1.1 527,353 + SM_b20505 0.35 +1.0 527,353 + SM_b20505 0.35 -2.1 527,644 + SM_b20505 0.72 +0.5 527,658 + SM_b20505 0.74 +1.5 527,741 - SM_b20505 0.85 -2.1 527,741 - SM_b20505 0.85 -0.1 527,741 - SM_b20505 0.85 -0.9 527,741 - SM_b20505 0.85 +2.7 527,741 - SM_b20505 0.85 +0.1 527,759 + SM_b20505 0.87 +1.8 527,759 + SM_b20505 0.87 +0.7 527,759 + SM_b20505 0.87 -3.4 527,857 + +1.9 527,857 + -1.7 527,857 + -0.3 527,858 - -0.9 527,858 - -2.2 527,858 - -0.3 527,860 - +0.5 527,887 + +0.8 527,937 + +0.1 527,937 + -0.8 527,938 - +1.2 527,984 + +0.6 527,990 + -2.6 527,990 + +1.0 527,991 - +1.3 527,991 - +1.0 527,991 - +1.4 528,053 - SM_b20506 0.16 +0.5 528,202 + SM_b20506 0.31 -0.4 528,203 - SM_b20506 0.31 +0.5 528,316 - SM_b20506 0.43 +1.1 528,470 - SM_b20506 0.59 +0.3 528,496 + SM_b20506 0.62 +1.8 528,496 + SM_b20506 0.62 -0.0 528,496 + SM_b20506 0.62 +1.2 528,589 + SM_b20506 0.72 -0.7 528,640 + SM_b20506 0.77 +0.5 528,867 + +2.1 528,867 + +0.0 528,867 + -0.2 528,867 + +0.1 528,868 - -2.5 528,868 - +0.9 528,868 - -1.1 528,868 - -0.6 529,034 + SM_b20507 0.11 -1.1 529,281 - SM_b20507 0.28 -0.4 529,489 + SM_b20507 0.41 +0.2 529,804 + SM_b20507 0.62 -0.0 529,804 + SM_b20507 0.62 -1.1 529,804 + SM_b20507 0.62 -2.6 529,804 + SM_b20507 0.62 +0.5 529,804 + SM_b20507 0.62 +0.1 529,805 - SM_b20507 0.62 -1.9 529,805 - SM_b20507 0.62 +0.2 529,817 + SM_b20507 0.63 +1.2
Or see this region's nucleotide sequence