Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20484 and SM_b20485 are separated by 105 nucleotides SM_b20485 and SM_b20486 overlap by 8 nucleotides SM_b20486 and SM_b20487 overlap by 4 nucleotides
SM_b20484: SM_b20484 - sugar ABC transporter substrate-binding protein, at 499,835 to 500,827
_b20484
SM_b20485: SM_b20485 - sugar ABC transporter ATP-binding protein, at 500,933 to 502,462
_b20485
SM_b20486: SM_b20486 - sugar ABC transporter permease, at 502,455 to 503,456
_b20486
SM_b20487: SM_b20487 - sugar ABC transporter permease, at 503,453 to 504,451
_b20487
Position (kb) 500
501
502
503 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 499.950 kb on + strand, within SM_b20484 at 500.106 kb on + strand, within SM_b20484 at 500.291 kb on + strand, within SM_b20484 at 500.292 kb on - strand, within SM_b20484 at 500.357 kb on + strand, within SM_b20484 at 500.358 kb on - strand, within SM_b20484 at 500.755 kb on + strand at 501.137 kb on + strand, within SM_b20485 at 501.138 kb on - strand, within SM_b20485 at 501.183 kb on - strand, within SM_b20485 at 501.183 kb on - strand, within SM_b20485 at 501.190 kb on + strand, within SM_b20485 at 501.190 kb on + strand, within SM_b20485 at 501.191 kb on - strand, within SM_b20485 at 501.324 kb on - strand, within SM_b20485 at 501.405 kb on - strand, within SM_b20485 at 501.405 kb on - strand, within SM_b20485 at 501.648 kb on - strand, within SM_b20485 at 501.794 kb on - strand, within SM_b20485 at 501.794 kb on - strand, within SM_b20485 at 502.355 kb on + strand at 502.355 kb on + strand at 502.409 kb on + strand at 502.409 kb on + strand at 502.410 kb on - strand at 502.454 kb on + strand at 502.454 kb on + strand at 502.455 kb on - strand at 502.460 kb on + strand at 502.460 kb on + strand at 502.460 kb on + strand at 502.515 kb on - strand at 502.650 kb on - strand, within SM_b20486 at 502.684 kb on - strand, within SM_b20486 at 502.842 kb on - strand, within SM_b20486 at 502.845 kb on + strand, within SM_b20486 at 502.845 kb on + strand, within SM_b20486 at 502.846 kb on - strand at 502.887 kb on + strand, within SM_b20486 at 502.950 kb on - strand, within SM_b20486 at 502.950 kb on - strand, within SM_b20486 at 502.950 kb on - strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.094 kb on - strand, within SM_b20486 at 503.169 kb on + strand, within SM_b20486 at 503.170 kb on - strand, within SM_b20486 at 503.170 kb on - strand, within SM_b20486
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 499,950 + SM_b20484 0.12 +0.5 500,106 + SM_b20484 0.27 -0.9 500,291 + SM_b20484 0.46 +0.3 500,292 - SM_b20484 0.46 +1.2 500,357 + SM_b20484 0.53 -0.5 500,358 - SM_b20484 0.53 +0.7 500,755 + -0.4 501,137 + SM_b20485 0.13 +0.3 501,138 - SM_b20485 0.13 +0.1 501,183 - SM_b20485 0.16 +0.2 501,183 - SM_b20485 0.16 -3.9 501,190 + SM_b20485 0.17 +0.8 501,190 + SM_b20485 0.17 -0.4 501,191 - SM_b20485 0.17 -0.2 501,324 - SM_b20485 0.26 -0.4 501,405 - SM_b20485 0.31 +0.4 501,405 - SM_b20485 0.31 -0.5 501,648 - SM_b20485 0.47 +0.5 501,794 - SM_b20485 0.56 +0.3 501,794 - SM_b20485 0.56 +0.7 502,355 + +0.1 502,355 + +0.1 502,409 + +0.4 502,409 + +0.5 502,410 - -0.4 502,454 + +0.9 502,454 + +1.5 502,455 - -1.7 502,460 + -2.5 502,460 + -3.2 502,460 + -3.5 502,515 - +1.1 502,650 - SM_b20486 0.19 +0.2 502,684 - SM_b20486 0.23 +0.4 502,842 - SM_b20486 0.39 -0.8 502,845 + SM_b20486 0.39 -0.0 502,845 + SM_b20486 0.39 +1.6 502,846 - -0.5 502,887 + SM_b20486 0.43 -0.5 502,950 - SM_b20486 0.49 +0.4 502,950 - SM_b20486 0.49 -0.2 502,950 - SM_b20486 0.49 -0.2 503,046 + SM_b20486 0.59 +0.0 503,046 + SM_b20486 0.59 +0.7 503,046 + SM_b20486 0.59 -0.5 503,046 + SM_b20486 0.59 +0.7 503,094 - SM_b20486 0.64 +0.3 503,169 + SM_b20486 0.71 +0.1 503,170 - SM_b20486 0.71 -0.4 503,170 - SM_b20486 0.71 -2.2
Or see this region's nucleotide sequence