Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20468

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20467 and SM_b20468 overlap by 4 nucleotidesSM_b20468 and SM_b20469 are separated by 29 nucleotides SM_b20467: SM_b20467 - sensor kinase, at 479,716 to 481,539 _b20467 SM_b20468: SM_b20468 - sensory transduction DNA-binding response regulator protein, at 481,536 to 482,180 _b20468 SM_b20469: SM_b20469 - hypothetical protein, at 482,210 to 483,286 _b20469 Position (kb) 481 482 483Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 480.569 kb on + strand, within SM_b20467at 480.570 kb on - strand, within SM_b20467at 480.570 kb on - strand, within SM_b20467at 480.583 kb on + strand, within SM_b20467at 480.583 kb on + strand, within SM_b20467at 480.584 kb on - strand, within SM_b20467at 480.884 kb on + strand, within SM_b20467at 481.018 kb on + strand, within SM_b20467at 481.018 kb on + strand, within SM_b20467at 481.018 kb on + strand, within SM_b20467at 481.019 kb on - strand, within SM_b20467at 481.041 kb on - strand, within SM_b20467at 481.082 kb on + strand, within SM_b20467at 481.083 kb on - strand, within SM_b20467at 481.083 kb on - strand, within SM_b20467at 481.083 kb on - strand, within SM_b20467at 481.194 kb on - strand, within SM_b20467at 481.211 kb on + strand, within SM_b20467at 481.211 kb on + strand, within SM_b20467at 481.212 kb on - strand, within SM_b20467at 481.212 kb on - strand, within SM_b20467at 481.212 kb on - strand, within SM_b20467at 481.214 kb on - strand, within SM_b20467at 481.214 kb on - strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.264 kb on - strand, within SM_b20467at 481.264 kb on - strand, within SM_b20467at 481.269 kb on - strand, within SM_b20467at 481.346 kb on + strand, within SM_b20467at 481.346 kb on + strand, within SM_b20467at 481.346 kb on + strand, within SM_b20467at 481.484 kb on + strandat 481.573 kb on + strandat 481.702 kb on + strand, within SM_b20468at 481.702 kb on + strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.733 kb on + strand, within SM_b20468at 481.819 kb on + strand, within SM_b20468at 481.908 kb on + strand, within SM_b20468at 481.909 kb on - strand, within SM_b20468at 481.928 kb on - strand, within SM_b20468at 482.107 kb on - strand, within SM_b20468at 482.107 kb on - strand, within SM_b20468at 482.148 kb on - strandat 482.319 kb on + strand, within SM_b20469at 482.319 kb on + strand, within SM_b20469at 482.319 kb on + strand, within SM_b20469at 482.320 kb on - strand, within SM_b20469at 482.320 kb on - strand, within SM_b20469at 482.320 kb on - strand, within SM_b20469at 482.329 kb on + strand, within SM_b20469at 482.330 kb on - strand, within SM_b20469at 482.330 kb on - strand, within SM_b20469at 482.330 kb on - strand, within SM_b20469at 482.475 kb on + strand, within SM_b20469at 482.475 kb on + strand, within SM_b20469at 482.475 kb on + strand, within SM_b20469at 482.476 kb on - strand, within SM_b20469at 482.476 kb on - strand, within SM_b20469at 482.485 kb on + strand, within SM_b20469at 482.485 kb on + strand, within SM_b20469at 482.485 kb on + strand, within SM_b20469at 482.671 kb on + strand, within SM_b20469at 482.671 kb on + strand, within SM_b20469at 482.733 kb on + strand, within SM_b20469at 482.733 kb on + strand, within SM_b20469at 482.733 kb on + strand, within SM_b20469at 482.733 kb on + strand, within SM_b20469at 482.734 kb on - strand, within SM_b20469at 482.776 kb on + strand, within SM_b20469at 482.776 kb on + strand, within SM_b20469at 482.777 kb on - strand, within SM_b20469at 483.025 kb on - strand, within SM_b20469at 483.026 kb on + strand, within SM_b20469at 483.026 kb on + strand, within SM_b20469at 483.026 kb on + strand, within SM_b20469at 483.027 kb on - strand, within SM_b20469at 483.027 kb on - strand, within SM_b20469at 483.027 kb on - strand, within SM_b20469at 483.027 kb on - strand, within SM_b20469at 483.040 kb on + strand, within SM_b20469at 483.064 kb on + strand, within SM_b20469at 483.064 kb on + strand, within SM_b20469at 483.065 kb on - strand, within SM_b20469at 483.066 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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480,569 + SM_b20467 0.47 -0.7
480,570 - SM_b20467 0.47 -2.2
480,570 - SM_b20467 0.47 -2.3
480,583 + SM_b20467 0.48 +1.3
480,583 + SM_b20467 0.48 +0.9
480,584 - SM_b20467 0.48 -0.8
480,884 + SM_b20467 0.64 -1.2
481,018 + SM_b20467 0.71 -0.8
481,018 + SM_b20467 0.71 +0.1
481,018 + SM_b20467 0.71 +0.0
481,019 - SM_b20467 0.71 +0.1
481,041 - SM_b20467 0.73 -3.6
481,082 + SM_b20467 0.75 +1.7
481,083 - SM_b20467 0.75 +0.2
481,083 - SM_b20467 0.75 -0.6
481,083 - SM_b20467 0.75 -1.7
481,194 - SM_b20467 0.81 -1.9
481,211 + SM_b20467 0.82 -0.5
481,211 + SM_b20467 0.82 +1.2
481,212 - SM_b20467 0.82 -3.5
481,212 - SM_b20467 0.82 +0.9
481,212 - SM_b20467 0.82 -1.1
481,214 - SM_b20467 0.82 -0.3
481,214 - SM_b20467 0.82 +3.6
481,263 + SM_b20467 0.85 +0.1
481,263 + SM_b20467 0.85 +1.3
481,263 + SM_b20467 0.85 +0.0
481,263 + SM_b20467 0.85 -1.5
481,263 + SM_b20467 0.85 +0.3
481,264 - SM_b20467 0.85 -0.5
481,264 - SM_b20467 0.85 -3.6
481,269 - SM_b20467 0.85 -1.7
481,346 + SM_b20467 0.89 -0.3
481,346 + SM_b20467 0.89 -1.9
481,346 + SM_b20467 0.89 -0.2
481,484 + +0.1
481,573 + -4.5
481,702 + SM_b20468 0.26 -3.5
481,702 + SM_b20468 0.26 +1.1
481,703 - SM_b20468 0.26 +0.3
481,703 - SM_b20468 0.26 +1.4
481,703 - SM_b20468 0.26 -2.3
481,703 - SM_b20468 0.26 -0.1
481,733 + SM_b20468 0.31 +0.8
481,819 + SM_b20468 0.44 -4.1
481,908 + SM_b20468 0.58 +2.2
481,909 - SM_b20468 0.58 -2.3
481,928 - SM_b20468 0.61 +0.5
482,107 - SM_b20468 0.89 +0.4
482,107 - SM_b20468 0.89 -2.1
482,148 - +0.3
482,319 + SM_b20469 0.10 -2.0
482,319 + SM_b20469 0.10 +1.2
482,319 + SM_b20469 0.10 +0.6
482,320 - SM_b20469 0.10 -3.4
482,320 - SM_b20469 0.10 -0.2
482,320 - SM_b20469 0.10 +3.8
482,329 + SM_b20469 0.11 -1.5
482,330 - SM_b20469 0.11 +0.7
482,330 - SM_b20469 0.11 -1.7
482,330 - SM_b20469 0.11 -0.2
482,475 + SM_b20469 0.25 +1.1
482,475 + SM_b20469 0.25 -1.4
482,475 + SM_b20469 0.25 +3.9
482,476 - SM_b20469 0.25 +1.7
482,476 - SM_b20469 0.25 -1.0
482,485 + SM_b20469 0.26 +0.1
482,485 + SM_b20469 0.26 -0.1
482,485 + SM_b20469 0.26 +0.4
482,671 + SM_b20469 0.43 -2.7
482,671 + SM_b20469 0.43 -0.8
482,733 + SM_b20469 0.49 +0.7
482,733 + SM_b20469 0.49 +0.2
482,733 + SM_b20469 0.49 +2.1
482,733 + SM_b20469 0.49 +0.3
482,734 - SM_b20469 0.49 +0.4
482,776 + SM_b20469 0.53 -0.4
482,776 + SM_b20469 0.53 -1.6
482,777 - SM_b20469 0.53 +1.4
483,025 - SM_b20469 0.76 +0.1
483,026 + SM_b20469 0.76 -2.2
483,026 + SM_b20469 0.76 +0.6
483,026 + SM_b20469 0.76 -0.5
483,027 - SM_b20469 0.76 -0.5
483,027 - SM_b20469 0.76 -0.1
483,027 - SM_b20469 0.76 -0.4
483,027 - SM_b20469 0.76 +1.2
483,040 + SM_b20469 0.77 +1.0
483,064 + SM_b20469 0.79 -3.2
483,064 + SM_b20469 0.79 +0.4
483,065 - SM_b20469 0.79 +0.7
483,066 + -1.2

Or see this region's nucleotide sequence