Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20455 and SM_b20456 are separated by 104 nucleotides SM_b20456 and SM_b20457 are separated by 80 nucleotides SM_b20457 and SM_b20458 are separated by 359 nucleotides
SM_b20455: SM_b20455 - transcriptional regulator, at 467,358 to 467,972
_b20455
SM_b20456: SM_b20456 - dehydrogenasereductase, at 468,077 to 468,823
_b20456
SM_b20457: SM_b20457 - transcriptional regulator transcription regulator protein, at 468,904 to 470,052
_b20457
SM_b20458: SM_b20458 - dTDP-glucose 4,6-dehydratase, at 470,412 to 471,458
_b20458
Position (kb) 468
469
470
471 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 467.973 kb on - strand at 467.979 kb on + strand at 467.980 kb on - strand at 467.980 kb on - strand at 467.980 kb on - strand at 467.980 kb on - strand at 468.021 kb on + strand at 468.022 kb on - strand at 468.191 kb on + strand, within SM_b20456 at 468.192 kb on - strand, within SM_b20456 at 468.192 kb on - strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.343 kb on - strand, within SM_b20456 at 468.424 kb on + strand, within SM_b20456 at 468.425 kb on - strand, within SM_b20456 at 468.545 kb on + strand, within SM_b20456 at 468.545 kb on + strand, within SM_b20456 at 468.546 kb on - strand, within SM_b20456 at 468.716 kb on + strand, within SM_b20456 at 468.718 kb on - strand, within SM_b20456 at 468.858 kb on + strand at 468.858 kb on + strand at 468.859 kb on - strand at 469.099 kb on - strand, within SM_b20457 at 469.161 kb on + strand, within SM_b20457 at 469.162 kb on - strand, within SM_b20457 at 469.163 kb on + strand, within SM_b20457 at 469.163 kb on + strand, within SM_b20457 at 469.164 kb on - strand, within SM_b20457 at 469.164 kb on - strand, within SM_b20457 at 469.199 kb on + strand, within SM_b20457 at 469.278 kb on + strand, within SM_b20457 at 469.278 kb on + strand, within SM_b20457 at 469.279 kb on - strand, within SM_b20457 at 469.279 kb on - strand, within SM_b20457 at 469.280 kb on + strand, within SM_b20457 at 469.280 kb on + strand, within SM_b20457 at 469.281 kb on - strand, within SM_b20457 at 469.373 kb on - strand, within SM_b20457 at 469.440 kb on + strand, within SM_b20457 at 469.440 kb on + strand, within SM_b20457 at 469.440 kb on + strand, within SM_b20457 at 469.441 kb on - strand, within SM_b20457 at 469.442 kb on + strand, within SM_b20457 at 469.442 kb on + strand, within SM_b20457 at 469.443 kb on - strand, within SM_b20457 at 469.529 kb on + strand, within SM_b20457 at 469.529 kb on + strand, within SM_b20457 at 469.529 kb on + strand, within SM_b20457 at 469.577 kb on + strand, within SM_b20457 at 469.727 kb on + strand, within SM_b20457 at 469.731 kb on + strand, within SM_b20457 at 469.731 kb on + strand, within SM_b20457 at 469.731 kb on + strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.854 kb on + strand, within SM_b20457 at 469.855 kb on - strand, within SM_b20457 at 469.855 kb on - strand, within SM_b20457 at 469.872 kb on + strand, within SM_b20457 at 469.919 kb on - strand, within SM_b20457 at 469.992 kb on + strand at 469.992 kb on + strand at 469.993 kb on - strand at 470.096 kb on + strand at 470.096 kb on + strand at 470.204 kb on + strand at 470.204 kb on + strand at 470.205 kb on - strand at 470.205 kb on - strand at 470.206 kb on + strand at 470.207 kb on - strand at 470.249 kb on - strand at 470.286 kb on - strand at 470.588 kb on + strand, within SM_b20458 at 470.589 kb on - strand, within SM_b20458 at 470.701 kb on - strand, within SM_b20458 at 470.701 kb on - strand, within SM_b20458 at 470.701 kb on - strand, within SM_b20458 at 470.703 kb on - strand, within SM_b20458 at 470.733 kb on + strand, within SM_b20458 at 470.734 kb on - strand, within SM_b20458 at 470.884 kb on - strand, within SM_b20458 at 470.884 kb on - strand, within SM_b20458 at 470.884 kb on - strand, within SM_b20458 at 470.884 kb on - strand, within SM_b20458 at 470.923 kb on - strand, within SM_b20458 at 470.923 kb on - strand, within SM_b20458 at 470.923 kb on - strand, within SM_b20458 at 471.015 kb on + strand, within SM_b20458
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 467,973 - +0.5 467,979 + +0.4 467,980 - -0.5 467,980 - -0.3 467,980 - -0.2 467,980 - +0.2 468,021 + +0.3 468,022 - +0.4 468,191 + SM_b20456 0.15 -0.9 468,192 - SM_b20456 0.15 +0.2 468,192 - SM_b20456 0.15 -0.6 468,342 + SM_b20456 0.35 +0.5 468,342 + SM_b20456 0.35 -1.7 468,342 + SM_b20456 0.35 -0.3 468,342 + SM_b20456 0.35 +0.8 468,343 - SM_b20456 0.36 -0.2 468,424 + SM_b20456 0.46 -0.5 468,425 - SM_b20456 0.47 -0.2 468,545 + SM_b20456 0.63 +0.9 468,545 + SM_b20456 0.63 -0.6 468,546 - SM_b20456 0.63 +1.6 468,716 + SM_b20456 0.86 +1.1 468,718 - SM_b20456 0.86 -0.4 468,858 + +0.7 468,858 + -0.9 468,859 - +1.2 469,099 - SM_b20457 0.17 -1.3 469,161 + SM_b20457 0.22 -0.7 469,162 - SM_b20457 0.22 +1.5 469,163 + SM_b20457 0.23 -0.5 469,163 + SM_b20457 0.23 -1.1 469,164 - SM_b20457 0.23 -1.1 469,164 - SM_b20457 0.23 +0.0 469,199 + SM_b20457 0.26 +1.1 469,278 + SM_b20457 0.33 -3.0 469,278 + SM_b20457 0.33 +0.6 469,279 - SM_b20457 0.33 -0.5 469,279 - SM_b20457 0.33 +1.2 469,280 + SM_b20457 0.33 -0.0 469,280 + SM_b20457 0.33 -2.0 469,281 - SM_b20457 0.33 +1.6 469,373 - SM_b20457 0.41 +1.0 469,440 + SM_b20457 0.47 -0.5 469,440 + SM_b20457 0.47 -0.2 469,440 + SM_b20457 0.47 +0.6 469,441 - SM_b20457 0.47 +0.2 469,442 + SM_b20457 0.47 +1.7 469,442 + SM_b20457 0.47 +0.4 469,443 - SM_b20457 0.47 -1.0 469,529 + SM_b20457 0.54 +1.7 469,529 + SM_b20457 0.54 -1.0 469,529 + SM_b20457 0.54 +0.1 469,577 + SM_b20457 0.59 -0.1 469,727 + SM_b20457 0.72 -2.7 469,731 + SM_b20457 0.72 +0.5 469,731 + SM_b20457 0.72 +1.9 469,731 + SM_b20457 0.72 +1.3 469,732 - SM_b20457 0.72 +0.6 469,732 - SM_b20457 0.72 +0.5 469,732 - SM_b20457 0.72 -0.4 469,732 - SM_b20457 0.72 +0.9 469,732 - SM_b20457 0.72 +0.1 469,732 - SM_b20457 0.72 -3.3 469,854 + SM_b20457 0.83 -0.5 469,855 - SM_b20457 0.83 -0.7 469,855 - SM_b20457 0.83 +1.3 469,872 + SM_b20457 0.84 +0.5 469,919 - SM_b20457 0.88 -3.0 469,992 + -0.7 469,992 + +1.3 469,993 - +3.7 470,096 + -2.0 470,096 + -1.9 470,204 + -0.5 470,204 + +0.5 470,205 - -3.3 470,205 - +0.6 470,206 + -0.9 470,207 - -1.5 470,249 - -1.6 470,286 - -0.4 470,588 + SM_b20458 0.17 -0.1 470,589 - SM_b20458 0.17 +0.9 470,701 - SM_b20458 0.28 -2.5 470,701 - SM_b20458 0.28 +1.3 470,701 - SM_b20458 0.28 +0.9 470,703 - SM_b20458 0.28 +0.1 470,733 + SM_b20458 0.31 +0.7 470,734 - SM_b20458 0.31 -1.5 470,884 - SM_b20458 0.45 +2.1 470,884 - SM_b20458 0.45 -0.4 470,884 - SM_b20458 0.45 +1.7 470,884 - SM_b20458 0.45 -3.9 470,923 - SM_b20458 0.49 +1.3 470,923 - SM_b20458 0.49 -1.2 470,923 - SM_b20458 0.49 +0.9 471,015 + SM_b20458 0.58 -0.5
Or see this region's nucleotide sequence