Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20417 and SM_b20418 are separated by 8 nucleotides SM_b20418 and SM_b20419 overlap by 1 nucleotides
SM_b20417: SM_b20417 - glycerol-3-phosphate ABC transporter permease, at 431,083 to 431,964
_b20417
SM_b20418: SM_b20418 - glycerol-3-phosphate ABC transporter permease, at 431,973 to 432,821
_b20418
SM_b20419: SM_b20419 - glycerol-3-phosphate ABC transporter ATP-binding protein, at 432,821 to 433,870
_b20419
Position (kb) 431
432
433 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 431.119 kb on + strand at 431.120 kb on - strand at 431.120 kb on - strand at 431.189 kb on - strand, within SM_b20417 at 431.420 kb on - strand, within SM_b20417 at 431.420 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.493 kb on + strand, within SM_b20417 at 431.493 kb on + strand, within SM_b20417 at 431.749 kb on + strand, within SM_b20417 at 431.750 kb on - strand, within SM_b20417 at 431.750 kb on - strand, within SM_b20417 at 431.764 kb on - strand, within SM_b20417 at 431.828 kb on - strand, within SM_b20417 at 431.828 kb on - strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.957 kb on - strand at 432.001 kb on + strand at 432.054 kb on + strand at 432.054 kb on + strand at 432.054 kb on + strand at 432.054 kb on + strand at 432.055 kb on - strand at 432.055 kb on - strand at 432.057 kb on + strand at 432.057 kb on + strand at 432.058 kb on - strand, within SM_b20418 at 432.060 kb on - strand, within SM_b20418 at 432.108 kb on - strand, within SM_b20418 at 432.145 kb on - strand, within SM_b20418 at 432.373 kb on - strand, within SM_b20418 at 432.373 kb on - strand, within SM_b20418 at 432.409 kb on - strand, within SM_b20418 at 432.409 kb on - strand, within SM_b20418 at 432.409 kb on - strand, within SM_b20418 at 432.572 kb on + strand, within SM_b20418 at 432.603 kb on + strand, within SM_b20418 at 432.604 kb on - strand, within SM_b20418 at 432.618 kb on + strand, within SM_b20418 at 432.619 kb on - strand, within SM_b20418 at 432.720 kb on + strand, within SM_b20418 at 432.720 kb on + strand, within SM_b20418 at 432.720 kb on + strand, within SM_b20418 at 432.721 kb on - strand, within SM_b20418 at 432.721 kb on - strand, within SM_b20418 at 432.819 kb on + strand at 432.820 kb on - strand at 432.857 kb on + strand at 432.857 kb on + strand at 432.857 kb on + strand at 432.858 kb on - strand at 433.039 kb on + strand, within SM_b20419 at 433.057 kb on + strand, within SM_b20419 at 433.057 kb on + strand, within SM_b20419 at 433.090 kb on + strand, within SM_b20419 at 433.115 kb on + strand, within SM_b20419 at 433.132 kb on + strand, within SM_b20419 at 433.133 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.642 kb on + strand, within SM_b20419 at 433.643 kb on - strand, within SM_b20419 at 433.727 kb on + strand, within SM_b20419 at 433.727 kb on + strand, within SM_b20419 at 433.728 kb on - strand, within SM_b20419
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 431,119 + +1.6 431,120 - -2.3 431,120 - -0.5 431,189 - SM_b20417 0.12 -2.0 431,420 - SM_b20417 0.38 -0.1 431,420 - SM_b20417 0.38 -0.5 431,492 - SM_b20417 0.46 -0.2 431,492 - SM_b20417 0.46 +0.4 431,492 - SM_b20417 0.46 +0.0 431,493 + SM_b20417 0.46 +0.8 431,493 + SM_b20417 0.46 +1.2 431,749 + SM_b20417 0.76 -0.6 431,750 - SM_b20417 0.76 -0.5 431,750 - SM_b20417 0.76 -1.0 431,764 - SM_b20417 0.77 -0.2 431,828 - SM_b20417 0.84 +0.0 431,828 - SM_b20417 0.84 -1.9 431,836 + SM_b20417 0.85 -0.9 431,836 + SM_b20417 0.85 -0.5 431,836 + SM_b20417 0.85 -0.5 431,837 - SM_b20417 0.85 +0.2 431,837 - SM_b20417 0.85 +0.6 431,838 + SM_b20417 0.86 +1.0 431,838 + SM_b20417 0.86 -3.2 431,957 - +0.1 432,001 + -1.9 432,054 + +0.3 432,054 + +0.8 432,054 + -0.2 432,054 + +0.6 432,055 - -3.0 432,055 - -1.2 432,057 + -0.2 432,057 + -0.5 432,058 - SM_b20418 0.10 +0.7 432,060 - SM_b20418 0.10 +0.0 432,108 - SM_b20418 0.16 +1.3 432,145 - SM_b20418 0.20 +0.4 432,373 - SM_b20418 0.47 +2.5 432,373 - SM_b20418 0.47 +1.2 432,409 - SM_b20418 0.51 +0.9 432,409 - SM_b20418 0.51 -0.5 432,409 - SM_b20418 0.51 +0.7 432,572 + SM_b20418 0.71 +1.1 432,603 + SM_b20418 0.74 +0.7 432,604 - SM_b20418 0.74 +0.6 432,618 + SM_b20418 0.76 +0.7 432,619 - SM_b20418 0.76 -4.7 432,720 + SM_b20418 0.88 +2.0 432,720 + SM_b20418 0.88 +3.9 432,720 + SM_b20418 0.88 -3.6 432,721 - SM_b20418 0.88 -2.5 432,721 - SM_b20418 0.88 +0.3 432,819 + +1.0 432,820 - +0.6 432,857 + +0.5 432,857 + -0.4 432,857 + +2.0 432,858 - -0.7 433,039 + SM_b20419 0.21 +0.2 433,057 + SM_b20419 0.22 +1.0 433,057 + SM_b20419 0.22 +0.7 433,090 + SM_b20419 0.26 -0.3 433,115 + SM_b20419 0.28 -0.6 433,132 + SM_b20419 0.30 -1.6 433,133 - SM_b20419 0.30 -0.7 433,389 - SM_b20419 0.54 +1.2 433,389 - SM_b20419 0.54 +0.8 433,389 - SM_b20419 0.54 -0.7 433,389 - SM_b20419 0.54 -0.3 433,642 + SM_b20419 0.78 +1.3 433,643 - SM_b20419 0.78 +0.4 433,727 + SM_b20419 0.86 +0.5 433,727 + SM_b20419 0.86 -0.5 433,728 - SM_b20419 0.86 +0.8
Or see this region's nucleotide sequence