Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20407 and SM_b20408 are separated by 3 nucleotides SM_b20408 and SM_b20409 overlap by 4 nucleotides SM_b20409 and SM_b20410 are separated by 68 nucleotides
SM_b20407: SM_b20407 - 5-oxoprolinase, at 422,142 to 424,343
_b20407
SM_b20408: SM_b20408 - hypothetical protein, at 424,347 to 424,844
_b20408
SM_b20409: SM_b20409 - 3-oxoacyl-ACP reductase, at 424,841 to 425,671
_b20409
SM_b20410: SM_b20410 - glycine-betaine-binding protein, at 425,740 to 426,678
_b20410
Position (kb) 424
425
426 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 423.882 kb on + strand, within SM_b20407 at 423.882 kb on + strand, within SM_b20407 at 423.915 kb on + strand, within SM_b20407 at 423.915 kb on + strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.960 kb on + strand, within SM_b20407 at 423.960 kb on + strand, within SM_b20407 at 423.962 kb on + strand, within SM_b20407 at 423.963 kb on - strand, within SM_b20407 at 423.963 kb on - strand, within SM_b20407 at 424.360 kb on - strand at 424.360 kb on - strand at 424.431 kb on + strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.433 kb on + strand, within SM_b20408 at 424.433 kb on + strand, within SM_b20408 at 424.434 kb on - strand, within SM_b20408 at 424.458 kb on + strand, within SM_b20408 at 424.591 kb on - strand, within SM_b20408 at 424.610 kb on + strand, within SM_b20408 at 424.948 kb on - strand, within SM_b20409 at 424.948 kb on - strand, within SM_b20409 at 425.061 kb on - strand, within SM_b20409 at 425.061 kb on - strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.206 kb on - strand, within SM_b20409 at 425.206 kb on - strand, within SM_b20409 at 425.305 kb on + strand, within SM_b20409 at 425.305 kb on + strand, within SM_b20409 at 425.306 kb on - strand, within SM_b20409 at 425.307 kb on + strand, within SM_b20409 at 425.308 kb on - strand, within SM_b20409 at 425.308 kb on - strand, within SM_b20409 at 425.351 kb on + strand, within SM_b20409 at 425.577 kb on - strand, within SM_b20409 at 425.643 kb on + strand at 425.643 kb on + strand at 425.643 kb on + strand at 425.643 kb on + strand at 425.644 kb on - strand at 425.644 kb on - strand at 425.711 kb on + strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.720 kb on + strand at 425.720 kb on + strand at 425.720 kb on + strand at 425.721 kb on - strand at 425.900 kb on + strand, within SM_b20410 at 425.906 kb on - strand, within SM_b20410 at 425.927 kb on + strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.944 kb on + strand, within SM_b20410 at 425.944 kb on + strand, within SM_b20410 at 425.945 kb on - strand, within SM_b20410 at 426.077 kb on - strand, within SM_b20410 at 426.077 kb on - strand, within SM_b20410 at 426.097 kb on + strand, within SM_b20410 at 426.097 kb on + strand, within SM_b20410 at 426.098 kb on - strand, within SM_b20410 at 426.373 kb on + strand, within SM_b20410 at 426.373 kb on + strand, within SM_b20410 at 426.374 kb on - strand, within SM_b20410 at 426.409 kb on + strand, within SM_b20410 at 426.423 kb on + strand, within SM_b20410 at 426.423 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.428 kb on - strand, within SM_b20410 at 426.428 kb on - strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.465 kb on + strand, within SM_b20410 at 426.465 kb on + strand, within SM_b20410 at 426.466 kb on - strand, within SM_b20410 at 426.466 kb on - strand, within SM_b20410
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 423,882 + SM_b20407 0.79 +2.0 423,882 + SM_b20407 0.79 +0.1 423,915 + SM_b20407 0.81 +0.1 423,915 + SM_b20407 0.81 -5.2 423,916 - SM_b20407 0.81 +1.5 423,916 - SM_b20407 0.81 +1.3 423,916 - SM_b20407 0.81 -0.4 423,916 - SM_b20407 0.81 -4.0 423,916 - SM_b20407 0.81 -0.6 423,916 - SM_b20407 0.81 -3.4 423,916 - SM_b20407 0.81 +1.5 423,916 - SM_b20407 0.81 -1.5 423,960 + SM_b20407 0.83 -0.4 423,960 + SM_b20407 0.83 +2.1 423,962 + SM_b20407 0.83 -0.7 423,963 - SM_b20407 0.83 -0.0 423,963 - SM_b20407 0.83 -0.2 424,360 - +2.1 424,360 - -0.3 424,431 + SM_b20408 0.17 +2.0 424,432 - SM_b20408 0.17 -2.8 424,432 - SM_b20408 0.17 +0.1 424,432 - SM_b20408 0.17 +0.3 424,432 - SM_b20408 0.17 +0.7 424,432 - SM_b20408 0.17 +0.5 424,432 - SM_b20408 0.17 +0.3 424,433 + SM_b20408 0.17 +1.9 424,433 + SM_b20408 0.17 -1.7 424,434 - SM_b20408 0.17 -0.7 424,458 + SM_b20408 0.22 -0.2 424,591 - SM_b20408 0.49 +1.2 424,610 + SM_b20408 0.53 +1.6 424,948 - SM_b20409 0.13 +0.7 424,948 - SM_b20409 0.13 +2.1 425,061 - SM_b20409 0.26 +1.1 425,061 - SM_b20409 0.26 -0.1 425,205 + SM_b20409 0.44 +0.5 425,205 + SM_b20409 0.44 -2.3 425,205 + SM_b20409 0.44 -0.2 425,206 - SM_b20409 0.44 +0.1 425,206 - SM_b20409 0.44 -0.0 425,305 + SM_b20409 0.56 +0.6 425,305 + SM_b20409 0.56 +1.3 425,306 - SM_b20409 0.56 +0.8 425,307 + SM_b20409 0.56 -0.2 425,308 - SM_b20409 0.56 +0.6 425,308 - SM_b20409 0.56 +1.6 425,351 + SM_b20409 0.61 -0.4 425,577 - SM_b20409 0.89 -0.3 425,643 + -0.7 425,643 + -0.2 425,643 + +0.3 425,643 + -0.8 425,644 - +0.2 425,644 - +0.6 425,711 + -1.7 425,712 - +1.9 425,712 - -0.1 425,712 - +1.0 425,712 - +1.1 425,712 - +0.9 425,720 + +1.0 425,720 + +1.0 425,720 + -1.3 425,721 - -0.5 425,900 + SM_b20410 0.17 -2.6 425,906 - SM_b20410 0.18 -1.0 425,927 + SM_b20410 0.20 +1.8 425,928 - SM_b20410 0.20 +0.3 425,928 - SM_b20410 0.20 -0.6 425,928 - SM_b20410 0.20 -3.2 425,928 - SM_b20410 0.20 +0.1 425,928 - SM_b20410 0.20 -0.4 425,928 - SM_b20410 0.20 -1.9 425,944 + SM_b20410 0.22 -0.0 425,944 + SM_b20410 0.22 +0.4 425,945 - SM_b20410 0.22 +4.8 426,077 - SM_b20410 0.36 +1.1 426,077 - SM_b20410 0.36 -1.4 426,097 + SM_b20410 0.38 -0.4 426,097 + SM_b20410 0.38 -0.8 426,098 - SM_b20410 0.38 +0.9 426,373 + SM_b20410 0.67 -0.7 426,373 + SM_b20410 0.67 +2.7 426,374 - SM_b20410 0.68 +1.0 426,409 + SM_b20410 0.71 -2.2 426,423 + SM_b20410 0.73 -2.1 426,423 + SM_b20410 0.73 +1.9 426,427 + SM_b20410 0.73 +0.8 426,427 + SM_b20410 0.73 +1.1 426,427 + SM_b20410 0.73 -3.4 426,427 + SM_b20410 0.73 +0.8 426,427 + SM_b20410 0.73 -0.6 426,427 + SM_b20410 0.73 -0.6 426,428 - SM_b20410 0.73 -2.4 426,428 - SM_b20410 0.73 -0.1 426,429 + SM_b20410 0.73 -2.2 426,429 + SM_b20410 0.73 +0.5 426,429 + SM_b20410 0.73 -1.0 426,465 + SM_b20410 0.77 +1.2 426,465 + SM_b20410 0.77 -3.1 426,466 - SM_b20410 0.77 -0.8 426,466 - SM_b20410 0.77 -0.4
Or see this region's nucleotide sequence