Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20384 and SM_b20385 are separated by 13 nucleotides SM_b20385 and SM_b20386 overlap by 4 nucleotides
SM_b20384: SM_b20384 - dipeptidase, at 395,419 to 396,390
_b20384
SM_b20385: SM_b20385 - hypothetical protein, at 396,404 to 397,132
_b20385
SM_b20386: SM_b20386 - hypothetical protein, at 397,129 to 398,865
_b20386
Position (kb) 396
397
398 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 395.531 kb on - strand, within SM_b20384 at 395.531 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.771 kb on - strand, within SM_b20384 at 395.844 kb on + strand, within SM_b20384 at 395.850 kb on + strand, within SM_b20384 at 396.146 kb on + strand, within SM_b20384 at 396.321 kb on - strand at 396.544 kb on - strand, within SM_b20385 at 396.996 kb on + strand, within SM_b20385 at 396.996 kb on + strand at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.053 kb on - strand, within SM_b20385 at 397.132 kb on + strand at 397.151 kb on + strand at 397.151 kb on + strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.293 kb on + strand at 397.293 kb on + strand at 397.568 kb on + strand, within SM_b20386 at 397.568 kb on + strand, within SM_b20386 at 397.568 kb on + strand, within SM_b20386 at 397.569 kb on - strand, within SM_b20386 at 397.732 kb on + strand, within SM_b20386 at 397.733 kb on - strand, within SM_b20386 at 397.733 kb on - strand, within SM_b20386 at 397.733 kb on - strand, within SM_b20386
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 395,531 - SM_b20384 0.12 -1.4 395,531 - SM_b20384 0.12 +1.2 395,601 - SM_b20384 0.19 -1.7 395,601 - SM_b20384 0.19 -1.4 395,771 - SM_b20384 0.36 +0.1 395,844 + SM_b20384 0.44 -0.1 395,850 + SM_b20384 0.44 +0.3 396,146 + SM_b20384 0.75 +0.7 396,321 - -0.8 396,544 - SM_b20385 0.19 -0.8 396,996 + SM_b20385 0.81 -3.9 396,996 + -0.4 397,052 + SM_b20385 0.89 +0.7 397,052 + SM_b20385 0.89 -2.2 397,052 + SM_b20385 0.89 -1.7 397,053 - SM_b20385 0.89 +0.0 397,132 + +0.0 397,151 + -0.3 397,151 + -0.3 397,152 - +0.5 397,152 - -0.7 397,152 - -1.9 397,152 - -4.2 397,293 + -0.9 397,293 + +0.6 397,568 + SM_b20386 0.25 -0.4 397,568 + SM_b20386 0.25 +0.4 397,568 + SM_b20386 0.25 -0.1 397,569 - SM_b20386 0.25 +0.3 397,732 + SM_b20386 0.35 +0.1 397,733 - SM_b20386 0.35 -0.9 397,733 - SM_b20386 0.35 -2.2 397,733 - SM_b20386 0.35 +1.5
Or see this region's nucleotide sequence