Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20356 and SM_b20357 are separated by 24 nucleotides SM_b20357 and SM_b20358 are separated by 8 nucleotides
SM_b20356: SM_b20356 - sensory histidine kinase, at 364,660 to 367,413
_b20356
SM_b20357: SM_b20357 - histidine kinase, at 367,438 to 367,803
_b20357
SM_b20358: SM_b20358 - regulatory protein, at 367,812 to 369,374
_b20358
Position (kb) 367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 366.503 kb on + strand, within SM_b20356 at 366.503 kb on + strand, within SM_b20356 at 366.504 kb on - strand, within SM_b20356 at 366.533 kb on + strand at 366.533 kb on + strand, within SM_b20356 at 366.534 kb on - strand, within SM_b20356 at 366.875 kb on + strand, within SM_b20356 at 366.876 kb on - strand, within SM_b20356 at 366.876 kb on - strand, within SM_b20356 at 366.975 kb on + strand at 366.976 kb on - strand, within SM_b20356 at 367.094 kb on + strand, within SM_b20356 at 367.095 kb on - strand, within SM_b20356 at 367.417 kb on + strand at 367.593 kb on + strand, within SM_b20357 at 367.593 kb on + strand, within SM_b20357 at 367.593 kb on + strand, within SM_b20357 at 367.664 kb on + strand, within SM_b20357 at 367.800 kb on - strand at 367.802 kb on - strand at 367.802 kb on - strand at 367.802 kb on - strand at 367.802 kb on - strand at 367.946 kb on + strand at 367.946 kb on + strand at 367.946 kb on + strand at 367.946 kb on + strand at 367.947 kb on - strand at 367.947 kb on - strand at 367.947 kb on - strand at 367.948 kb on + strand at 368.104 kb on + strand at 368.104 kb on + strand, within SM_b20358 at 368.104 kb on + strand, within SM_b20358 at 368.104 kb on + strand, within SM_b20358 at 368.104 kb on + strand, within SM_b20358 at 368.104 kb on + strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.158 kb on + strand, within SM_b20358 at 368.612 kb on - strand, within SM_b20358 at 368.644 kb on - strand, within SM_b20358 at 368.747 kb on - strand, within SM_b20358
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 366,503 + SM_b20356 0.67 -1.8 366,503 + SM_b20356 0.67 +1.4 366,504 - SM_b20356 0.67 +0.3 366,533 + +1.9 366,533 + SM_b20356 0.68 -1.5 366,534 - SM_b20356 0.68 -1.2 366,875 + SM_b20356 0.80 +1.3 366,876 - SM_b20356 0.80 -2.3 366,876 - SM_b20356 0.80 -0.0 366,975 + -0.8 366,976 - SM_b20356 0.84 -3.1 367,094 + SM_b20356 0.88 -0.1 367,095 - SM_b20356 0.88 -3.5 367,417 + +0.5 367,593 + SM_b20357 0.42 +1.6 367,593 + SM_b20357 0.42 -3.0 367,593 + SM_b20357 0.42 -0.7 367,664 + SM_b20357 0.62 -3.2 367,800 - -0.6 367,802 - +0.6 367,802 - +0.1 367,802 - -0.9 367,802 - +0.6 367,946 + +0.8 367,946 + +1.7 367,946 + -0.4 367,946 + -3.1 367,947 - +1.0 367,947 - +0.6 367,947 - +1.2 367,948 + -1.9 368,104 + +1.2 368,104 + SM_b20358 0.19 -0.5 368,104 + SM_b20358 0.19 -0.7 368,104 + SM_b20358 0.19 +0.4 368,104 + SM_b20358 0.19 -2.9 368,104 + SM_b20358 0.19 +0.7 368,105 - SM_b20358 0.19 +0.2 368,105 - SM_b20358 0.19 -3.6 368,105 - SM_b20358 0.19 +0.3 368,105 - SM_b20358 0.19 -0.1 368,105 - SM_b20358 0.19 +0.3 368,105 - SM_b20358 0.19 -1.4 368,105 - SM_b20358 0.19 -0.6 368,105 - SM_b20358 0.19 +1.0 368,105 - SM_b20358 0.19 +1.2 368,158 + SM_b20358 0.22 -3.4 368,612 - SM_b20358 0.51 +0.5 368,644 - SM_b20358 0.53 -1.6 368,747 - SM_b20358 0.60 +0.6
Or see this region's nucleotide sequence