Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20297 and SM_b20298 overlap by 4 nucleotides SM_b20298 and SM_b20299 are separated by 13 nucleotides SM_b20299 and SM_b20300 are separated by 336 nucleotides
SM_b20297: SM_b20297 - permease, at 303,470 to 304,750
_b20297
SM_b20298: SM_b20298 - hypothetical protein, at 304,747 to 305,682
_b20298
SM_b20299: SM_b20299 - N-acetylneuraminate lyase, at 305,696 to 306,595
_b20299
SM_b20300: SM_b20300 - adenylate cyclase, at 306,932 to 308,845
_b20300
Position (kb) 305
306
307 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 305.102 kb on - strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.170 kb on - strand, within SM_b20298 at 305.219 kb on + strand, within SM_b20298 at 305.220 kb on - strand, within SM_b20298 at 305.371 kb on + strand, within SM_b20298 at 305.372 kb on - strand, within SM_b20298 at 305.596 kb on + strand at 305.596 kb on + strand at 305.596 kb on + strand at 305.597 kb on - strand at 305.598 kb on + strand at 305.598 kb on + strand at 305.598 kb on + strand at 305.599 kb on - strand at 305.599 kb on - strand at 305.693 kb on - strand at 305.693 kb on - strand at 305.714 kb on + strand at 305.816 kb on + strand, within SM_b20299 at 305.816 kb on + strand, within SM_b20299 at 305.816 kb on + strand, within SM_b20299 at 305.817 kb on - strand, within SM_b20299 at 305.817 kb on - strand, within SM_b20299 at 305.817 kb on - strand, within SM_b20299 at 305.873 kb on + strand, within SM_b20299 at 306.017 kb on + strand, within SM_b20299 at 306.017 kb on + strand, within SM_b20299 at 306.021 kb on - strand, within SM_b20299 at 306.021 kb on - strand, within SM_b20299 at 306.096 kb on - strand, within SM_b20299 at 306.096 kb on - strand, within SM_b20299 at 306.097 kb on + strand, within SM_b20299 at 306.097 kb on + strand, within SM_b20299 at 306.098 kb on - strand, within SM_b20299 at 306.098 kb on - strand, within SM_b20299 at 306.181 kb on + strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.242 kb on + strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.312 kb on - strand, within SM_b20299 at 306.312 kb on - strand, within SM_b20299 at 306.314 kb on - strand, within SM_b20299 at 306.594 kb on - strand at 306.661 kb on - strand at 306.737 kb on + strand at 306.738 kb on - strand at 306.771 kb on + strand at 306.772 kb on - strand at 306.780 kb on - strand at 306.900 kb on - strand at 306.940 kb on + strand at 306.977 kb on + strand at 306.977 kb on + strand at 306.978 kb on - strand at 306.980 kb on - strand at 307.013 kb on + strand at 307.013 kb on + strand at 307.013 kb on + strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.219 kb on - strand, within SM_b20300 at 307.352 kb on + strand, within SM_b20300 at 307.545 kb on + strand, within SM_b20300
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 305,102 - SM_b20298 0.38 +0.3 305,167 + SM_b20298 0.45 -0.6 305,167 + SM_b20298 0.45 -1.2 305,167 + SM_b20298 0.45 -0.0 305,167 + SM_b20298 0.45 -1.4 305,170 - SM_b20298 0.45 -1.0 305,219 + SM_b20298 0.50 -1.1 305,220 - SM_b20298 0.51 -0.3 305,371 + SM_b20298 0.67 -1.3 305,372 - SM_b20298 0.67 -1.4 305,596 + -3.1 305,596 + +0.5 305,596 + -0.2 305,597 - -0.6 305,598 + -1.0 305,598 + +1.2 305,598 + +0.2 305,599 - -1.6 305,599 - +0.8 305,693 - +0.1 305,693 - +0.6 305,714 + +1.1 305,816 + SM_b20299 0.13 +0.0 305,816 + SM_b20299 0.13 -2.1 305,816 + SM_b20299 0.13 -0.4 305,817 - SM_b20299 0.13 -0.1 305,817 - SM_b20299 0.13 +0.5 305,817 - SM_b20299 0.13 +0.4 305,873 + SM_b20299 0.20 +1.2 306,017 + SM_b20299 0.36 -2.6 306,017 + SM_b20299 0.36 +1.0 306,021 - SM_b20299 0.36 -1.4 306,021 - SM_b20299 0.36 -2.6 306,096 - SM_b20299 0.44 +0.1 306,096 - SM_b20299 0.44 -4.2 306,097 + SM_b20299 0.45 +0.3 306,097 + SM_b20299 0.45 +0.9 306,098 - SM_b20299 0.45 -1.2 306,098 - SM_b20299 0.45 -0.1 306,181 + SM_b20299 0.54 -0.5 306,182 - SM_b20299 0.54 +0.7 306,182 - SM_b20299 0.54 -1.2 306,182 - SM_b20299 0.54 -0.6 306,242 + SM_b20299 0.61 -2.6 306,243 - SM_b20299 0.61 -1.6 306,243 - SM_b20299 0.61 -0.2 306,243 - SM_b20299 0.61 -2.1 306,312 - SM_b20299 0.68 +0.2 306,312 - SM_b20299 0.68 +0.5 306,314 - SM_b20299 0.69 -2.8 306,594 - +1.0 306,661 - +0.0 306,737 + -0.8 306,738 - +1.9 306,771 + +0.7 306,772 - +0.5 306,780 - -0.4 306,900 - +0.2 306,940 + -2.9 306,977 + +1.3 306,977 + -0.9 306,978 - -0.2 306,980 - +0.8 307,013 + +0.6 307,013 + +0.3 307,013 + -3.1 307,051 - +0.0 307,051 - +0.8 307,051 - -0.4 307,051 - -2.3 307,051 - +1.7 307,218 + SM_b20300 0.15 +1.5 307,218 + SM_b20300 0.15 +1.2 307,218 + SM_b20300 0.15 -0.7 307,218 + SM_b20300 0.15 +0.6 307,218 + SM_b20300 0.15 +0.6 307,219 - SM_b20300 0.15 -0.8 307,352 + SM_b20300 0.22 +0.4 307,545 + SM_b20300 0.32 -0.1
Or see this region's nucleotide sequence