Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20268 and SM_b20269 overlap by 4 nucleotides SM_b20269 and SM_b20270 are separated by 50 nucleotides
SM_b20268: SM_b20268 - hydroxyproline-2-epimerase, at 272,694 to 273,695
_b20268
SM_b20269: SM_b20269 - hypothetical protein, at 273,692 to 275,383
_b20269
SM_b20270: SM_b20270 - proline racemase, at 275,434 to 276,462
_b20270
Position (kb) 273
274
275
276 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 272.936 kb on - strand, within SM_b20268 at 273.075 kb on + strand, within SM_b20268 at 273.075 kb on + strand, within SM_b20268 at 273.076 kb on - strand, within SM_b20268 at 273.076 kb on - strand, within SM_b20268 at 273.196 kb on - strand, within SM_b20268 at 273.257 kb on + strand, within SM_b20268 at 273.750 kb on + strand at 274.293 kb on - strand, within SM_b20269 at 274.293 kb on - strand, within SM_b20269 at 274.293 kb on - strand, within SM_b20269 at 274.293 kb on - strand, within SM_b20269 at 274.293 kb on - strand, within SM_b20269 at 274.457 kb on + strand, within SM_b20269 at 274.457 kb on + strand, within SM_b20269 at 274.696 kb on - strand, within SM_b20269 at 274.696 kb on - strand, within SM_b20269 at 275.007 kb on + strand, within SM_b20269 at 275.233 kb on + strand at 275.264 kb on + strand at 275.264 kb on + strand at 275.264 kb on + strand at 275.265 kb on - strand at 275.265 kb on - strand at 275.265 kb on - strand at 275.302 kb on - strand at 275.302 kb on - strand at 275.689 kb on - strand, within SM_b20270 at 275.847 kb on + strand, within SM_b20270 at 275.848 kb on - strand, within SM_b20270 at 275.848 kb on - strand, within SM_b20270 at 276.378 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 272,936 - SM_b20268 0.24 +1.0 273,075 + SM_b20268 0.38 -1.3 273,075 + SM_b20268 0.38 -2.7 273,076 - SM_b20268 0.38 +0.2 273,076 - SM_b20268 0.38 +0.4 273,196 - SM_b20268 0.50 -0.8 273,257 + SM_b20268 0.56 -0.2 273,750 + -2.0 274,293 - SM_b20269 0.36 -2.7 274,293 - SM_b20269 0.36 -0.4 274,293 - SM_b20269 0.36 -0.5 274,293 - SM_b20269 0.36 -4.1 274,293 - SM_b20269 0.36 -2.3 274,457 + SM_b20269 0.45 +1.4 274,457 + SM_b20269 0.45 +0.1 274,696 - SM_b20269 0.59 +0.3 274,696 - SM_b20269 0.59 +0.2 275,007 + SM_b20269 0.78 +0.1 275,233 + +0.2 275,264 + -0.6 275,264 + -0.6 275,264 + +0.1 275,265 - -0.6 275,265 - +0.5 275,265 - -1.4 275,302 - -0.2 275,302 - -0.4 275,689 - SM_b20270 0.25 +0.8 275,847 + SM_b20270 0.40 -0.5 275,848 - SM_b20270 0.40 -1.1 275,848 - SM_b20270 0.40 +0.5 276,378 + +0.5
Or see this region's nucleotide sequence