Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20240 and SM_b20241 overlap by 4 nucleotides SM_b20241 and SM_b20242 overlap by 4 nucleotides
SM_b20240: SM_b20240 - hypothetical protein, at 244,260 to 245,378
_b20240
SM_b20241: SM_b20241 - hypothetical protein, at 245,375 to 246,460
_b20241
SM_b20242: SM_b20242 - hypothetical protein, at 246,457 to 247,587
_b20242
Position (kb) 245
246
247 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 244.384 kb on + strand, within SM_b20240 at 244.873 kb on + strand, within SM_b20240 at 245.039 kb on - strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.179 kb on + strand, within SM_b20240 at 245.180 kb on - strand, within SM_b20240 at 245.442 kb on + strand at 245.442 kb on + strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.446 kb on + strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.599 kb on - strand at 245.754 kb on + strand, within SM_b20241 at 245.755 kb on - strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.962 kb on - strand, within SM_b20241 at 245.997 kb on + strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.345 kb on + strand, within SM_b20241 at 246.346 kb on - strand, within SM_b20241 at 246.399 kb on + strand at 246.400 kb on - strand at 246.460 kb on + strand at 246.461 kb on - strand at 246.510 kb on - strand at 246.792 kb on - strand, within SM_b20242 at 246.873 kb on - strand, within SM_b20242 at 247.074 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.096 kb on - strand, within SM_b20242 at 247.127 kb on + strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.170 kb on - strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.368 kb on - strand, within SM_b20242 at 247.432 kb on + strand, within SM_b20242
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 244,384 + SM_b20240 0.11 +2.4 244,873 + SM_b20240 0.55 -0.2 245,039 - SM_b20240 0.70 +1.2 245,104 + SM_b20240 0.75 -0.3 245,104 + SM_b20240 0.75 +0.4 245,105 - SM_b20240 0.76 +2.1 245,105 - SM_b20240 0.76 -1.4 245,179 + SM_b20240 0.82 -1.2 245,180 - SM_b20240 0.82 -0.1 245,442 + -0.8 245,442 + +0.2 245,443 - -0.4 245,443 - -1.6 245,443 - -3.5 245,443 - +0.9 245,443 - +2.0 245,443 - -1.2 245,446 + -0.5 245,447 - -2.7 245,447 - -0.5 245,447 - -0.1 245,447 - -0.5 245,599 - +2.5 245,754 + SM_b20241 0.35 +1.9 245,755 - SM_b20241 0.35 -0.0 245,961 + SM_b20241 0.54 +0.5 245,961 + SM_b20241 0.54 +0.5 245,961 + SM_b20241 0.54 +0.6 245,962 - SM_b20241 0.54 -0.4 245,997 + SM_b20241 0.57 +0.1 246,274 - SM_b20241 0.83 +0.4 246,274 - SM_b20241 0.83 +0.1 246,345 + SM_b20241 0.89 +0.1 246,346 - SM_b20241 0.89 -0.3 246,399 + -3.0 246,400 - +1.0 246,460 + +0.2 246,461 - +1.3 246,510 - -4.2 246,792 - SM_b20242 0.30 +0.2 246,873 - SM_b20242 0.37 -3.4 247,074 + SM_b20242 0.55 -1.0 247,095 + SM_b20242 0.56 -2.2 247,095 + SM_b20242 0.56 +0.5 247,096 - SM_b20242 0.56 +0.1 247,127 + SM_b20242 0.59 -2.1 247,128 - SM_b20242 0.59 +0.8 247,128 - SM_b20242 0.59 +1.9 247,170 - SM_b20242 0.63 -2.0 247,367 + SM_b20242 0.80 +0.3 247,367 + SM_b20242 0.80 -0.1 247,368 - SM_b20242 0.81 -1.4 247,432 + SM_b20242 0.86 -0.6
Or see this region's nucleotide sequence