Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20204 and SM_b20205 are separated by 41 nucleotides SM_b20205 and SM_b20206 overlap by 4 nucleotides SM_b20206 and SM_b20207 overlap by 4 nucleotides SM_b20207 and SM_b20208 overlap by 4 nucleotides
SM_b20204: SM_b20204 - coenzyme PQQ synthesis protein PqqA, at 213,692 to 213,787
_b20204
SM_b20205: SM_b20205 - pyrroloquinoline quinone biosynthesis protein PqqB, at 213,829 to 214,740
_b20205
SM_b20206: SM_b20206 - pyrroloquinoline quinone biosynthesis protein PqqC, at 214,737 to 215,507
_b20206
SM_b20207: SM_b20207 - pyrroloquinoline quinone synthesis protein D, at 215,504 to 215,800
_b20207
SM_b20208: SM_b20208 - pyrroloquinoline quinone biosynthesis protein PqqE, at 215,797 to 216,924
_b20208
Position (kb) 214
215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 214.361 kb on + strand, within SM_b20205 at 214.361 kb on + strand, within SM_b20205 at 214.362 kb on - strand, within SM_b20205 at 214.414 kb on + strand, within SM_b20205 at 214.414 kb on + strand, within SM_b20205 at 214.415 kb on - strand, within SM_b20205 at 214.417 kb on + strand, within SM_b20205 at 214.417 kb on + strand, within SM_b20205 at 214.418 kb on - strand, within SM_b20205 at 214.418 kb on - strand, within SM_b20205 at 214.483 kb on + strand, within SM_b20205 at 214.630 kb on + strand, within SM_b20205 at 214.630 kb on + strand, within SM_b20205 at 214.630 kb on + strand, within SM_b20205 at 214.631 kb on - strand, within SM_b20205 at 214.631 kb on - strand, within SM_b20205 at 214.714 kb on + strand at 214.715 kb on - strand at 214.800 kb on + strand at 214.888 kb on - strand, within SM_b20206 at 214.888 kb on - strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.891 kb on - strand, within SM_b20206 at 215.062 kb on - strand, within SM_b20206 at 215.062 kb on - strand, within SM_b20206 at 215.083 kb on + strand, within SM_b20206 at 215.083 kb on + strand, within SM_b20206 at 215.115 kb on + strand, within SM_b20206 at 215.115 kb on + strand, within SM_b20206 at 215.116 kb on - strand, within SM_b20206 at 215.116 kb on - strand, within SM_b20206 at 215.227 kb on - strand, within SM_b20206 at 215.310 kb on + strand, within SM_b20206 at 215.310 kb on + strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.418 kb on + strand, within SM_b20206 at 215.418 kb on + strand, within SM_b20206 at 215.419 kb on - strand, within SM_b20206 at 215.419 kb on - strand, within SM_b20206 at 215.808 kb on + strand at 215.809 kb on - strand at 215.809 kb on - strand at 215.908 kb on + strand at 215.908 kb on + strand at 215.908 kb on + strand at 215.909 kb on - strand at 215.952 kb on - strand, within SM_b20208 at 216.088 kb on + strand, within SM_b20208 at 216.232 kb on + strand, within SM_b20208 at 216.276 kb on + strand, within SM_b20208 at 216.425 kb on + strand, within SM_b20208 at 216.425 kb on + strand, within SM_b20208 at 216.426 kb on - strand, within SM_b20208 at 216.498 kb on - strand, within SM_b20208
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 214,361 + SM_b20205 0.58 -2.7 214,361 + SM_b20205 0.58 -2.9 214,362 - SM_b20205 0.58 -3.0 214,414 + SM_b20205 0.64 +2.1 214,414 + SM_b20205 0.64 +0.6 214,415 - SM_b20205 0.64 -0.9 214,417 + SM_b20205 0.64 -2.8 214,417 + SM_b20205 0.64 +1.1 214,418 - SM_b20205 0.65 -0.9 214,418 - SM_b20205 0.65 +1.2 214,483 + SM_b20205 0.72 -0.6 214,630 + SM_b20205 0.88 +0.4 214,630 + SM_b20205 0.88 -0.4 214,630 + SM_b20205 0.88 -1.0 214,631 - SM_b20205 0.88 -1.4 214,631 - SM_b20205 0.88 -0.9 214,714 + -0.0 214,715 - +0.2 214,800 + -0.9 214,888 - SM_b20206 0.20 +0.3 214,888 - SM_b20206 0.20 +1.0 214,890 + SM_b20206 0.20 -1.2 214,890 + SM_b20206 0.20 -0.3 214,890 + SM_b20206 0.20 -3.4 214,891 - SM_b20206 0.20 -0.0 215,062 - SM_b20206 0.42 +0.1 215,062 - SM_b20206 0.42 +3.1 215,083 + SM_b20206 0.45 +0.4 215,083 + SM_b20206 0.45 -0.8 215,115 + SM_b20206 0.49 -0.8 215,115 + SM_b20206 0.49 +0.9 215,116 - SM_b20206 0.49 +0.7 215,116 - SM_b20206 0.49 +0.2 215,227 - SM_b20206 0.64 +1.0 215,310 + SM_b20206 0.74 -0.1 215,310 + SM_b20206 0.74 -1.1 215,311 - SM_b20206 0.74 +0.6 215,311 - SM_b20206 0.74 +1.0 215,311 - SM_b20206 0.74 +0.9 215,418 + SM_b20206 0.88 +0.8 215,418 + SM_b20206 0.88 +0.3 215,419 - SM_b20206 0.88 -0.3 215,419 - SM_b20206 0.88 -1.0 215,808 + -0.5 215,809 - +0.3 215,809 - -0.4 215,908 + +1.5 215,908 + -2.9 215,908 + -0.1 215,909 - -0.8 215,952 - SM_b20208 0.14 -0.4 216,088 + SM_b20208 0.26 -0.9 216,232 + SM_b20208 0.39 -2.0 216,276 + SM_b20208 0.42 -1.1 216,425 + SM_b20208 0.56 -2.5 216,425 + SM_b20208 0.56 +0.3 216,426 - SM_b20208 0.56 +0.2 216,498 - SM_b20208 0.62 -0.6
Or see this region's nucleotide sequence