Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20198 and SM_b20199 are separated by 32 nucleotides SM_b20199 and SM_b20200 are separated by 2 nucleotides
SM_b20198: SM_b20198 - ribulose bisophosphate carboxylase, at 205,767 to 207,227
_b20198
SM_b20199: SM_b20199 - fructose-1,6-bisphosphate aldolase, at 207,260 to 208,339
_b20199
SM_b20200: SM_b20200 - transketolase, at 208,342 to 210,426
_b20200
Position (kb) 207
208
209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 206.318 kb on + strand, within SM_b20198 at 206.320 kb on + strand, within SM_b20198 at 206.321 kb on - strand, within SM_b20198 at 206.503 kb on + strand, within SM_b20198 at 206.503 kb on + strand, within SM_b20198 at 206.504 kb on - strand, within SM_b20198 at 206.560 kb on + strand, within SM_b20198 at 206.561 kb on - strand, within SM_b20198 at 206.566 kb on + strand, within SM_b20198 at 206.567 kb on - strand, within SM_b20198 at 206.665 kb on + strand, within SM_b20198 at 206.666 kb on - strand, within SM_b20198 at 206.666 kb on - strand, within SM_b20198 at 206.666 kb on - strand, within SM_b20198 at 206.666 kb on - strand, within SM_b20198 at 206.788 kb on + strand, within SM_b20198 at 206.920 kb on + strand, within SM_b20198 at 206.929 kb on + strand, within SM_b20198 at 206.930 kb on - strand, within SM_b20198 at 207.133 kb on + strand at 207.133 kb on + strand at 207.133 kb on + strand at 207.227 kb on + strand at 207.227 kb on + strand at 207.227 kb on + strand at 207.230 kb on + strand at 207.548 kb on + strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.731 kb on - strand, within SM_b20199 at 207.739 kb on - strand, within SM_b20199 at 207.957 kb on - strand, within SM_b20199 at 207.979 kb on + strand, within SM_b20199 at 207.979 kb on + strand, within SM_b20199 at 207.981 kb on + strand, within SM_b20199 at 207.982 kb on - strand, within SM_b20199 at 208.122 kb on + strand, within SM_b20199 at 208.287 kb on + strand at 208.400 kb on - strand at 208.621 kb on - strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 209.045 kb on + strand, within SM_b20200 at 209.045 kb on + strand, within SM_b20200 at 209.096 kb on + strand, within SM_b20200 at 209.097 kb on - strand, within SM_b20200 at 209.195 kb on + strand, within SM_b20200 at 209.204 kb on + strand, within SM_b20200 at 209.205 kb on - strand, within SM_b20200 at 209.205 kb on - strand, within SM_b20200
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 206,318 + SM_b20198 0.38 +1.4 206,320 + SM_b20198 0.38 -1.6 206,321 - SM_b20198 0.38 -0.3 206,503 + SM_b20198 0.50 -0.7 206,503 + SM_b20198 0.50 +0.2 206,504 - SM_b20198 0.50 -0.6 206,560 + SM_b20198 0.54 +1.9 206,561 - SM_b20198 0.54 +1.5 206,566 + SM_b20198 0.55 -0.1 206,567 - SM_b20198 0.55 -0.4 206,665 + SM_b20198 0.61 +0.7 206,666 - SM_b20198 0.62 -3.9 206,666 - SM_b20198 0.62 +0.2 206,666 - SM_b20198 0.62 +1.1 206,666 - SM_b20198 0.62 +0.9 206,788 + SM_b20198 0.70 -0.9 206,920 + SM_b20198 0.79 +0.2 206,929 + SM_b20198 0.80 +0.4 206,930 - SM_b20198 0.80 +1.2 207,133 + -0.4 207,133 + -0.6 207,133 + -1.4 207,227 + -0.2 207,227 + +1.1 207,227 + +1.6 207,230 + -1.8 207,548 + SM_b20199 0.27 +0.4 207,549 - SM_b20199 0.27 +2.1 207,549 - SM_b20199 0.27 +1.1 207,549 - SM_b20199 0.27 -0.1 207,731 - SM_b20199 0.44 -0.1 207,739 - SM_b20199 0.44 +0.2 207,957 - SM_b20199 0.65 +0.3 207,979 + SM_b20199 0.67 +1.2 207,979 + SM_b20199 0.67 +2.1 207,981 + SM_b20199 0.67 -0.9 207,982 - SM_b20199 0.67 +1.6 208,122 + SM_b20199 0.80 -0.4 208,287 + -1.9 208,400 - -0.5 208,621 - SM_b20200 0.13 +0.2 208,793 + SM_b20200 0.22 +0.3 208,793 + SM_b20200 0.22 -3.2 208,793 + SM_b20200 0.22 +0.5 208,794 - SM_b20200 0.22 +1.4 208,794 - SM_b20200 0.22 +4.4 208,794 - SM_b20200 0.22 +3.6 208,811 - SM_b20200 0.22 +0.7 208,811 - SM_b20200 0.22 +0.5 208,811 - SM_b20200 0.22 +0.5 208,811 - SM_b20200 0.22 -0.8 209,045 + SM_b20200 0.34 -2.0 209,045 + SM_b20200 0.34 -0.8 209,096 + SM_b20200 0.36 -0.8 209,097 - SM_b20200 0.36 -0.3 209,195 + SM_b20200 0.41 -0.2 209,204 + SM_b20200 0.41 -2.1 209,205 - SM_b20200 0.41 +0.0 209,205 - SM_b20200 0.41 +0.7
Or see this region's nucleotide sequence