Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20158 and SM_b20159 are separated by 53 nucleotides SM_b20159 and SM_b22005 are separated by 678 nucleotides
SM_b20158: SM_b20158 - ABC transporter substrate-binding protein, at 176,427 to 177,551
_b20158
SM_b20159: SM_b20159 - inositol monophosphatase, at 177,605 to 178,489
_b20159
SM_b22005: SM_b22005 - hypothetical protein, at 179,168 to 179,536
_b22005
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 176.623 kb on - strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.865 kb on + strand, within SM_b20158 at 176.880 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.973 kb on + strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.975 kb on + strand, within SM_b20158 at 177.231 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.348 kb on - strand, within SM_b20158 at 177.752 kb on + strand, within SM_b20159 at 177.753 kb on - strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.778 kb on - strand, within SM_b20159 at 177.820 kb on + strand, within SM_b20159 at 177.821 kb on - strand, within SM_b20159 at 178.002 kb on - strand, within SM_b20159 at 178.338 kb on - strand, within SM_b20159 at 178.397 kb on + strand, within SM_b20159 at 178.612 kb on - strand at 178.740 kb on + strand at 178.810 kb on - strand at 178.866 kb on + strand at 178.869 kb on + strand at 178.869 kb on + strand at 178.870 kb on - strand at 178.870 kb on - strand at 178.870 kb on - strand at 178.897 kb on + strand at 178.897 kb on + strand at 178.917 kb on + strand at 178.918 kb on - strand at 179.000 kb on - strand at 179.000 kb on - strand at 179.088 kb on + strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 176,623 - SM_b20158 0.17 -0.9 176,781 + SM_b20158 0.31 -0.3 176,781 + SM_b20158 0.31 +0.2 176,781 + SM_b20158 0.31 +1.6 176,782 - SM_b20158 0.32 -1.3 176,782 - SM_b20158 0.32 -1.8 176,782 - SM_b20158 0.32 +0.5 176,865 + SM_b20158 0.39 -0.8 176,880 + SM_b20158 0.40 +1.5 176,905 + SM_b20158 0.42 +1.6 176,905 + SM_b20158 0.42 -2.2 176,905 + SM_b20158 0.42 +0.5 176,973 + SM_b20158 0.49 -0.7 176,974 - SM_b20158 0.49 +0.9 176,974 - SM_b20158 0.49 +0.7 176,975 + SM_b20158 0.49 +0.2 177,231 + SM_b20158 0.71 +0.6 177,279 + SM_b20158 0.76 +0.2 177,279 + SM_b20158 0.76 +0.0 177,280 - SM_b20158 0.76 -1.9 177,280 - SM_b20158 0.76 -0.6 177,280 - SM_b20158 0.76 +1.8 177,280 - SM_b20158 0.76 +0.2 177,345 + SM_b20158 0.82 +0.5 177,345 + SM_b20158 0.82 +0.4 177,345 + SM_b20158 0.82 +0.4 177,346 - SM_b20158 0.82 -0.2 177,346 - SM_b20158 0.82 -1.1 177,348 - SM_b20158 0.82 -0.5 177,752 + SM_b20159 0.17 -1.1 177,753 - SM_b20159 0.17 +0.4 177,777 + SM_b20159 0.19 -0.5 177,777 + SM_b20159 0.19 -1.3 177,778 - SM_b20159 0.20 +0.2 177,820 + SM_b20159 0.24 +0.6 177,821 - SM_b20159 0.24 +0.0 178,002 - SM_b20159 0.45 -2.5 178,338 - SM_b20159 0.83 -1.5 178,397 + SM_b20159 0.89 +4.0 178,612 - +0.9 178,740 + -0.1 178,810 - -0.3 178,866 + -0.6 178,869 + -1.1 178,869 + -1.6 178,870 - -0.3 178,870 - -0.2 178,870 - +1.7 178,897 + +1.3 178,897 + +0.4 178,917 + -0.7 178,918 - +0.4 179,000 - +1.2 179,000 - -1.3 179,088 + +2.1 179,089 - -1.8 179,089 - -3.6 179,089 - -0.8 179,089 - +0.5 179,089 - +1.7 179,089 - -1.2
Or see this region's nucleotide sequence